Evidence map›Paper›PMID 26067270›Full record

ArticleThe Journal of biological chemistry2015

Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.

Akiyuki Toda, Toshiharu Tsurumura, Toru Yoshida, Yayoi Tsumori, Hideaki Tsuge

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  11. Substrate NThe Journal of biological chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Akiyuki TodaFrom the Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, and.
Toshiharu TsurumuraFrom the Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, and the Structural Biology Research Center, Kyoto Sangyo University, Kamigamo-Motoyama, Kyoto 603-8555, Japan.
Toru YoshidaFrom the Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, and the Structural Biology Research Center, Kyoto Sangyo University, Kamigamo-Motoyama, Kyoto 603-8555, Japan.
Yayoi TsumoriFrom the Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, and.
Hideaki TsugeFrom the Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, and the Structural Biology Research Center, Kyoto Sangyo University, Kamigamo-Motoyama, Kyoto 603-8555, Japan tsuge@cc.kyoto-su.ac.jp.ORCID http://orcid.org/0000-0003-0166-9163

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C3 exoenzyme is a mono-ADP-ribosyltransferase (ART) that catalyzes transfer of an ADP-ribose moiety from NAD(+) to Rho GTPases. C3 has long been used to study the diverse regulatory functions of Rho GTPases. How C3 recognizes its substrate and how ADP-ribosylation proceeds are still poorly understood. Crystal structures of C3-RhoA complex reveal that C3 recognizes RhoA via the switch I, switch II, and interswitch regions. In C3-RhoA(GTP) and C3-RhoA(GDP), switch I and II adopt the GDP and GTP conformations, respectively, which explains why C3 can ADP-ribosylate both nucleotide forms. Based on structural information, we successfully changed Cdc42 to an active substrate with combined mutations in the C3-Rho GTPase interface. Moreover, the structure reflects the close relationship among Gln-183 in the QXE motif (C3), a modified Asn-41 residue (RhoA) and NC1 of NAD(H), which suggests that C3 is the prototype ART. These structures show directly for the first time that the ARTT loop is the key to target protein recognition, and they also serve to bridge the gaps among independent studies of Rho GTPases and C3.

Indexed as

Adenosine Diphosphate RiboseADP Ribose TransferasesAmino Acid SequenceBacterial Proteinscdc42 GTP-Binding ProteinCrystallography, X-RayEscherichia coliGene ExpressionHumansHydrophobic and Hydrophilic InteractionsKineticsLigandsMolecular Docking SimulationMolecular Sequence DataNADProtein Bindingactin-specific ADP-ribosyltransferase, ClostridiumAdenosine Diphosphate RiboseADP Ribose TransferasesBacterial Proteinscdc42 GTP-Binding ProteinLigandsNADRecombinant ProteinsADP-ribosylationbacterial toxinC3 exoenzymeCDC42protein-protein interactionprotein structureRalARhoARho (Rho GTPase)signal transduction

Identifiers

PMID26067270
PMCPMC4528107

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.