Evidence map›Paper›PMID 26067174›Full record

ArticleBioorganic & medicinal chemistry letters2015

High affinity binding of conformationally constrained synthetic oligomers to an antigen-specific antibody: Discovery of a diagnostically useful synthetic ligand for murine Type 1 diabetes autoantibodies.

Todd M Doran, Yu Gao, Scott Simanski, Patrick McEnaney, Thomas Kodadek

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Chemical Tools To Monitor and Manipulate Adaptive Immune Responses.Journal of the American Chemical Society · 2016
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Todd M DoranThe Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Yu GaoThe Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Scott SimanskiThe Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Patrick McEnaneyThe Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States.
Thomas KodadekThe Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, United States. Electronic address: kodadek@scripps.edu.
Scripps Research Institute · US

Funding

Discovery and Treatment of the Early Autoimmune Reaction In Type 1 DiabetesDP3DK094309 · NIDDK · SCRIPPS FLORIDA · PI KODADEK, THOMAS J. · 2011 to 2011
$5.0M
NIDDK NIH HHS 1 DP3 DK094309-01NIDDK NIH HHS DP3 DK094309
6 · The paper itself

Abstract

'Antigen surrogates' are synthetic, non-natural molecules that recognize the antigen-binding sites of antibodies. These molecules are of interest as replacements for native antigens as antibody 'capture agents' in ELISA-like assays of potential diagnostic utility, for example when the antibody is indicative of a disease state. Antigen surrogates for disease-related antibodies can be mined from one-bead one-compound (OBOC) libraries by first denuding the library of ligands for antibodies present in the serum of control patients or animals, followed by screening the remainder of the library against serum from individuals with a particular disease of interest. Most of the work in this area has been done with peptoids (oligomers of N-alkylated glycine), which provide antibody ligands with only modest affinity and selectivity. Here, we explore the hypothesis that this is due to the 'floppiness' of the peptoid backbone by creating libraries of peptoid-like molecules that have conformation-restricting structural elements inserted into their backbones. Indeed, we show here that these libraries can provide high affinity and selectivity antigen surrogates and that this much-improved binding is completely dependent on conformational restriction of the oligomer chain.

Indexed as

Drug DiscoveryAnimalsAutoantibodiesBinding Sites, AntibodyDiabetes Mellitus, Type 1LigandsMiceMolecular ConformationMolecular StructurePeptoidsStructure-Activity RelationshipAutoantibodiesLigandsPeptoidsAntigen surrogateNOD mouseOBOC library screeningPeptide tertiary amideType 1 diabetes

Identifiers

PMID26067174
PMCPMC4607566
OpenAlexW368019374

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.