Evidence map›Paper›PMID 26067164›Full record

ArticleNature communications2015

Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I.

Yogesh K Gupta, Siu-Hong Chan, Shuang-Yong Xu, Aneel K Aggarwal

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Structures and mechanisms of the RNA mActa biochimica et biophysica Sinica · 2024
    Review
  11. Article
  12. bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Structural insights into DNA NCell discovery · 2023
    Article
  17. Review
  18. Article
  19. Impacts ofMicrobial genomics · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yogesh K GuptaDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, Box 1677, 1425 Madison Avenue, New York, New York 10029, USA.ORCID 0000000163725007
Siu-Hong ChanNew England Biolabs Inc., 240 County Road, Ipswich, Massachusetts 01938, USA.
Shuang-Yong XuNew England Biolabs Inc., 240 County Road, Ipswich, Massachusetts 01938, USA.
Aneel K AggarwalDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, Box 1677, 1425 Madison Avenue, New York, New York 10029, USA.
Icahn School of Medicine at Mount Sinai · USNew England Biolabs (United States) · US

Funding

Structure-function analysis of a molecular switch for long-range diffusion on DNAR01GM111507 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AGGARWAL, ANEEL K. · 2014 to 2017
$1.3M
NIGMS NIH HHS R01 GM111507
6 · The paper itself

Abstract

Type III R-M enzymes were identified >40 years ago and yet there is no structural information on these multisubunit enzymes. Here we report the structure of a Type III R-M system, consisting of the entire EcoP15I complex (Mod2Res1) bound to DNA. The structure suggests how ATP hydrolysis is coupled to long-range diffusion of a helicase on DNA, and how a dimeric methyltransferase functions to methylate only one of the two DNA strands. We show that the EcoP15I motor domains are specifically adapted to bind double-stranded DNA and to facilitate DNA sliding via a novel 'Pin' domain. We also uncover unexpected 'division of labour', where one Mod subunit recognizes DNA, while the other Mod subunit methylates the target adenine--a mechanism that may extend to adenine N6 RNA methylation in mammalian cells. Together the structure sheds new light on the mechanisms of both helicases and methyltransferases in DNA and RNA metabolism.

Indexed as

DNA MethylationAdenosine TriphosphateCrystallizationCrystallography, X-RayDiffusionDNADNA HelicasesEscherichia coliHydrolysisMolecular Docking SimulationSite-Specific DNA-Methyltransferase (Adenine-Specific)Adenosine TriphosphateDNADNA HelicasesDNA modification methylase EcoP15ISite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID26067164
PMCPMC4490356
OpenAlexW2220161143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.