Evidence map›Paper›PMID 26067030›Full record

ArticlePloS one2015

Genomic Organization of Repetitive DNA Elements and Its Implications for the Chromosomal Evolution of Channid Fishes (Actinopterygii, Perciformes).

Marcelo de Bello Cioffi, Luiz Antonio Carlos Bertollo, Mateo Andres Villa, Ezequiel Aguiar de Oliveira, Alongklod Tanomtong, Cassia Fernanda Yano, Weerayuth Supiwong, Arunrat Chaveerach

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Chromosome complements ofComparative cytogenetics · 2023
    Article
  5. Comparative study of fourComparative cytogenetics · 2021
    Article
  6. Article
  7. Mobile Elements in Ray-Finned Fish Genomes.Life (Basel, Switzerland) · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marcelo de Bello CioffiDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Luiz Antonio Carlos BertolloDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Mateo Andres VillaFranklin College of Arts and Sciences, University of Georgia, Athens, Georgia, United States of America.
Ezequiel Aguiar de OliveiraDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Alongklod TanomtongDepartment of Biology, Faculty of Science, Khon Kaen University, Muang District, Khon Kaen, Thailand.
Cassia Fernanda YanoDepartamento de Genética e Evolução, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Weerayuth SupiwongFaculty of applied science and engineering, Khon Kaen University, Nong Kai Campus, Muang, Nong Kai, 43000, Thailand.
Arunrat ChaveerachDepartment of Biology, Faculty of Science, Khon Kaen University, Muang District, Khon Kaen, Thailand; Genetics and Environmental Toxicology Research Group, Khon Kaen University, Muang District, Khon Kaen, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Channid fishes, commonly referred to as "snakeheads", are currently very important in Asian fishery and aquaculture due to the substantial decline in natural populations because of overexploitation. A large degree of chromosomal variation has been found in this family, mainly through the use of conventional cytogenetic investigations. In this study, we analyzed the karyotype structure and the distribution of 7 repetitive DNA sequences in several Channa species from different Thailand river basins. The aim of this study was to investigate the chromosomal differentiation among species and populations to improve upon the knowledge of its biodiversity and evolutionary history. Rearrangements, such as pericentric inversions, fusions and polyploidization, appear to be important events during the karyotypic evolution of this genus, resulting in the chromosomal diversity observed among the distinct species and even among populations of the same species. In addition, such variability is also increased by the genomic dynamism of repetitive elements, particularly by the differential distribution and accumulation of rDNA sequences on chromosomes. This marked diversity is likely linked to the lifestyle of the snakehead fishes and their population fragmentation, as already identified for other fish species. The karyotypic features highlight the biodiversity of the channid fishes and justify a taxonomic revision of the genus Channa, as well as of the Channidae family as a whole, as some nominal species may actually constitute species complexes.

Indexed as

Evolution, MolecularGenomeRepetitive Sequences, Nucleic AcidAnimalsChromosomesPerciformes

Identifiers

PMID26067030
PMCPMC4466321

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.