Evidence map›Paper›PMID 26066803›Full record

ArticleJournal of biomolecular NMR2015

CONNJUR Workflow Builder: a software integration environment for spectral reconstruction.

Matthew Fenwick, Gerard Weatherby, Jay Vyas, Colbert Sesanker, Timothy O Martyn, Heidi J C Ellis, Michael R Gryk

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Embedding Analytics within the Curation of Scientific Workflows.International journal of digital curation · 2020
    Article
  2. Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis.Transforming digital worlds : 13th International Conference, iConference 2018, Sheffield, UK, March 25-28, 2018, Proceedings. International Conference on Transforming Digital Worlds (13th : 2018 : Sheffield, England) · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthew FenwickDepartment of Molecular Biology and Biophysics, UConn Health, Farmington, CT, 06030-3305, USA.
Gerard Weatherby
Jay Vyas
Colbert Sesanker
Timothy O Martyn
Heidi J C Ellis
Michael R Gryk

Funding

CONNJUR: A Software Integration Platform for Biomolecular NMR SpectroscopyR01GM083072 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRYK, MICHAEL R · 2009 to 2012
$1.2M
NIGMS NIH HHS GM-083072NIGMS NIH HHS R01 GM083072
6 · The paper itself

Abstract

CONNJUR Workflow Builder (WB) is an open-source software integration environment that leverages existing spectral reconstruction tools to create a synergistic, coherent platform for converting biomolecular NMR data from the time domain to the frequency domain. WB provides data integration of primary data and metadata using a relational database, and includes a library of pre-built workflows for processing time domain data. WB simplifies maximum entropy reconstruction, facilitating the processing of non-uniformly sampled time domain data. As will be shown in the paper, the unique features of WB provide it with novel abilities to enhance the quality, accuracy, and fidelity of the spectral reconstruction process. WB also provides features which promote collaboration, education, parameterization, and non-uniform data sets along with processing integrated with the Rowland NMR Toolkit (RNMRTK) and NMRPipe software packages. WB is available free of charge in perpetuity, dual-licensed under the MIT and GPL open source licenses.

Indexed as

SoftwareComputational BiologyNuclear Magnetic Resonance, BiomolecularUser-Computer Interface

Identifiers

PMID26066803
PMCPMC4864993

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.