Evidence map›Paper›PMID 26066369›Full record

ArticleGenes and immunity2015

Transcriptome analysis reveals a classical interferon signature induced by IFNλ4 in human primary cells.

C Lauber, G Vieyres, E Terczyńska-Dyla, Anggakusuma, R Dijkman, H H Gad, H Akhtar, R Geffers, F W R Vondran, V Thiel and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Mechanisms of Differential Signal Transduction by IFNLR1 Variants.bioRxiv : the preprint server for biology · 2025
    Article
  4. Function of Interferon Lambda Receptor 1 Variants in Stem Cell-Derived Hepatocytes with Abrogated EndogenousJournal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2025
    Article
  5. From defense to disease: IFITM3 in immunity and Alzheimer's disease.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

C LauberInstitute for Medical Informatics and Biometry, Technische Universität Dresden, Dresden, Germany.
G VieyresInstitute of Experimental Virology, TWINCORE, Centre for Experimental and Clinical Infection Research; a joint venture between the Medical School Hannover (MHH) and the Helmholtz Centre for Infection Research (HZI), Hannover, Germany.
E Terczyńska-DylaDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
AnggakusumaInstitute of Experimental Virology, TWINCORE, Centre for Experimental and Clinical Infection Research; a joint venture between the Medical School Hannover (MHH) and the Helmholtz Centre for Infection Research (HZI), Hannover, Germany.
R DijkmanInstitute of Virology and Immunology IVI, Bern, and Vetsuisse Faculty, University of Bern, Länggassstrasse 122, Bern, Switzerland.
H H GadDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
H AkhtarDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
R GeffersGenome Analytics, Helmholtz Centre for Infection Research, Braunschweig, Germany.
F W R VondranGerman Centre for Infection Research (DZIF), partner site Hannover-Braunschweig, Germany.
V ThielInstitute of Virology and Immunology IVI, Bern, and Vetsuisse Faculty, University of Bern, Länggassstrasse 122, Bern, Switzerland.
L KaderaliInstitute for Medical Informatics and Biometry, Technische Universität Dresden, Dresden, Germany.
T PietschmannInstitute of Experimental Virology, TWINCORE, Centre for Experimental and Clinical Infection Research; a joint venture between the Medical School Hannover (MHH) and the Helmholtz Centre for Infection Research (HZI), Hannover, Germany.
R HartmannDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.ORCID http://orcid.org/0000-0003-1159-066X
Aarhus University · DKHelmholtz Centre for Infection Research · DETechnische Universität Dresden · DEUniversity of Bern · CHGerman Center for Infection Research · DEMedizinische Hochschule Hannover · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The IFNL4 gene is negatively associated with spontaneous and treatment-induced clearance of hepatitis C virus infection. The activity of IFNλ4 has an important causal role in the pathogenesis, but the molecular details are not fully understood. One possible reason for the detrimental effect of IFNλ4 could be a tissue-specific regulation of an unknown subset of genes. To address both tissue and subtype specificity in the interferon response, we treated primary human hepatocytes and airway epithelial cells with IFNα, IFNλ3 or IFNλ4 and assessed interferon mediated gene regulation using transcriptome sequencing. Our data show a surprisingly similar response to all three subtypes of interferon. We also addressed the tissue specificity of the response, and identified a subset of tissue-specific genes. However, the interferon response is robust in both tissues with the majority of the identified genes being regulated in hepatocytes as well as airway epithelial cells. Thus we provide an in-depth analysis of the liver interferon response seen over an array of interferon subtypes and compare it to the response in the lung epithelium.

Indexed as

Epithelial CellsGene Expression ProfilingGene Expression RegulationHepatocytesHumansInterferon LambdaInterleukinsLungOligonucleotide Array Sequence AnalysisOrgan SpecificityPrimary Cell CultureTranscriptomeIFNL4 protein, humanInterferon LambdaInterleukins

Identifiers

PMID26066369
PMCPMC7308733
OpenAlexW1547599695

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.