Evidence map›Paper›PMID 26064586›Full record

ArticleRoyal Society open science2015

Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches.

Simon M Tierney, Steven J B Cooper, Kathleen M Saint, Terry Bertozzi, Josephine Hyde, William F Humphreys, Andrew D Austin

Open access · goldAbstract read
In one paragraph

Article in Royal Society open science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 59 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Simon M TierneyAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia.ORCID 0000-0002-8812-6753
Steven J B CooperAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia ; Evolutionary Biology Unit , South Australian Museum, North Terrace , Adelaide, South Australia 5000, Australia.
Kathleen M SaintEvolutionary Biology Unit , South Australian Museum, North Terrace , Adelaide, South Australia 5000, Australia.
Terry BertozziAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia ; Evolutionary Biology Unit , South Australian Museum, North Terrace , Adelaide, South Australia 5000, Australia.
Josephine HydeAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia.
William F HumphreysAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia ; Terrestrial Zoology , Western Australian Museum, Locked Bag 49, Welshpool DC , Western Australia 6986, Australia ; School of Animal Biology , University of Western Australia , Nedlands, Western Australia 6907, Australia.
Andrew D AustinAustralian Centre for Evolutionary Biology and Biodiversity and School of Biological Sciences , University of Adelaide , South Australia 5005, Australia.
South Australian Museum · AUThe University of Adelaide · AUAustralian Museum · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The regressive evolution of eyes has long intrigued biologists yet the genetic underpinnings remain opaque. A system of discrete aquifers in arid Australia provides a powerful comparative means to explore trait regression at the genomic level. Multiple surface ancestors from two tribes of diving beetles (Dytiscidae) repeatedly invaded these calcrete aquifers and convergently evolved eye-less phenotypes. We use this system to assess transcription of opsin photoreceptor genes among the transcriptomes of two surface and three subterranean dytiscid species and test whether these genes have evolved under neutral predictions. Transcripts for UV, long-wavelength and ciliary-type opsins were identified from the surface beetle transcriptomes. Two subterranean beetles showed parallel loss of all opsin transcription, as expected under 'neutral' regressive evolution. The third species Limbodessus palmulaoides retained transcription of a long-wavelength opsin (lwop) orthologue, albeit in an aphotic environment. Tests of selection on lwop indicated no significant differences between transcripts derived from surface and subterranean habitats, with strong evidence for purifying selection acting on L. palmulaoides lwop. Retention of sequence integrity and the lack of evidence for neutral evolution raise the question of whether we have identified a novel pleiotropic role for lwop, or an incipient phase of pseudogene development.

Indexed as

BidessiniHydroporiniopsinpleiotropypseudogeneregressive evolution

Identifiers

PMID26064586
PMCPMC4448788
OpenAlexW2149515729

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.