Evidence map›Paper›PMID 26063859›Full record

ArticleJournal of clinical microbiology2015

Development and Evaluation of an Enterovirus D68 Real-Time Reverse Transcriptase PCR Assay.

Todd N Wylie, Kristine M Wylie, Richard S Buller, Maria Cannella, Gregory A Storch

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

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  17. Enterovirus D68 respiratory infection in a children's hospital in Japan in 2015.Pediatrics international : official journal of the Japan Pediatric Society · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Todd N WylieDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, USA.
Kristine M WylieDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, USA.
Richard S BullerDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.
Maria CannellaDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.
Gregory A StorchDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA storch_g@kids.wustl.edu.
Washington University in St. Louis · US

Funding

Viral Triggers of Alloimmunity and Autoimmunity in Pediatric Lung TransplantationU01AI077810 · NIAID · WASHINGTON UNIVERSITY · PI SWEET, STUART C · 2008 to 2017
$11.1M
DEFINING THE HUMAN VIROME IN IMMUNOCOMPROMISED CHILDRENR01AI097213 · NIAID · WASHINGTON UNIVERSITY · PI STORCH, GREGORY A. · 2012 to 2016
$3.2M
NIAID NIH HHS R01 AI097213NIAID NIH HHS R01AI097213NIAID NIH HHS U01 AI077810NIAID NIH HHS U01AI077810
6 · The paper itself

Abstract

We have developed and evaluated a real-time reverse transcriptase PCR (RT-PCR) assay for the detection of human enterovirus D68 (EV-D68) in clinical specimens. This assay was developed in response to the unprecedented 2014 nationwide EV-D68 outbreak in the United States associated with severe respiratory illness. As part of our evaluation of the outbreak, we sequenced and published the genome sequence of the EV-D68 virus circulating in St. Louis, MO. This sequence, along with other GenBank sequences from past EV-D68 occurrences, was used to computationally select a region of EV-D68 appropriate for targeting in a strain-specific RT-PCR assay. The RT-PCR assay amplifies a segment of the VP1 gene, with an analytic limit of detection of 4 copies per reaction, and it was more sensitive than commercially available assays that detect enteroviruses and rhinoviruses without distinguishing between the two, including three multiplex respiratory panels approved for clinical use by the FDA. The assay did not detect any other enteroviruses or rhinoviruses tested and did detect divergent strains of EV-D68, including the first EV-D68 strain (Fermon) identified in California in 1962. This assay should be useful for identifying and studying current and future outbreaks of EV-D68 viruses.

Indexed as

DNA PrimersEnterovirus D, HumanEnterovirus InfectionsHumansMolecular Diagnostic TechniquesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSensitivity and SpecificityDNA Primers

Identifiers

PMID26063859
PMCPMC4508392
OpenAlexW2105656997

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.