Evidence map›Paper›PMID 26063819›Full record

ArticleJournal of the Royal Society, Interface2015

Three-dimensional imaging of human stem cells using soft X-ray tomography.

J C Niclis, S V Murphy, D Y Parkinson, A Zedan, A H Sathananthan, D S Cram, P Heraud

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Hard X-Ray Nanoholotomography: Large-Scale, Label-Free, 3D Neuroimaging beyond Optical Limit.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2018
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J C NiclisDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria 3800, Australia The Florey Institute of Neuroscience and Mental Health, Melbourne University, Parkville, Victoria 3052, Australia.
S V MurphyThe Ritchie Centre, Monash Institute of Medical Research, Monash University, Clayton, Victoria 3800, Australia Wake Forest Baptist Medical Center, Wake Forest Institute for Regenerative Medicine, Winston-Salem, NC, USA.
D Y ParkinsonAdvanced Light Source, Lawrence Berkeley National Laboratory, US Department of Energy, Berkeley, CA, USA.
A ZedanAdvanced Light Source, Lawrence Berkeley National Laboratory, US Department of Energy, Berkeley, CA, USA.
A H SathananthanDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria 3800, Australia.
D S CramDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria 3800, Australia.
P HeraudDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Victoria 3800, Australia Centre for Biospectroscopy, School of Chemistry, Monash University, Melbourne, Victoria, Australia phil.heraud@monash.edu.

Funding

TrainingP41GM103445 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LARABELL, CAROLYN A · 2012 to 2019
$8.2M
NIGMS NIH HHS P41 GM103445NIGMS NIH HHS P41GM103445
6 · The paper itself

Abstract

Three-dimensional imaging of human stem cells using transmission soft X-ray tomography (SXT) is presented for the first time. Major organelle types--nuclei, nucleoli, mitochondria, lysosomes and vesicles--were discriminated at approximately 50 nm spatial resolution without the use of contrast agents, on the basis of measured linear X-ray absorption coefficients and comparison of the size and shape of structures to transmission electron microscopy (TEM) images. In addition, SXT was used to visualize the distribution of a cell surface protein using gold-labelled antibody staining. We present the strengths of SXT, which include excellent spatial resolution (intermediate between that of TEM and light microscopy), the lack of the requirement for fixative or contrast agent that might perturb cellular morphology or produce imaging artefacts, and the ability to produce three-dimensional images of cells without microtome sectioning. Possible applications to studying the differentiation of human stem cells are discussed.

Indexed as

Electron Microscope TomographyImaging, Three-DimensionalTomography, X-RayAntibodiesCell NucleolusGoldHumansLysosomesMitochondriaStaining and LabelingStem CellsAntibodiesGoldhumanstem cellsthree-dimensionaltransmission soft X-ray microscopy

Identifiers

PMID26063819
PMCPMC4528589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.