Evidence map›Paper›PMID 26063800›Full record

ArticleThe Journal of biological chemistry2015

Promoters of Human Cosmc and T-synthase Genes Are Similar in Structure, Yet Different in Epigenetic Regulation.

Junwei Zeng, Rongjuan Mi, Yingchun Wang, Yujing Li, Li Lin, Bing Yao, Lina Song, Irma van Die, Arlene B Chapman, Richard D Cummings and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. C1GALT1 in health and disease.Oncology letters · 2021
    Review
  12. Global view of human protein glycosylation pathways and functions.Nature reviews. Molecular cell biology · 2020
    Review
  13. Cosmc overexpression enhances malignancies in human colon cancer.Journal of cellular and molecular medicine · 2020
    Article
  14. Alzheimer's & dementia (New York, N. Y.) · 2020
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Galactosylation of IgA1 Is Associated with Common Variation inJournal of the American Society of Nephrology : JASN · 2017
    Article
  20. Epigenetic Bases of Aberrant Glycosylation in Cancer.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Junwei ZengFrom the Departments of Biochemistry.
Rongjuan MiFrom the Departments of Biochemistry.
Yingchun WangFrom the Departments of Biochemistry.
Yujing LiHuman Genetics, and.
Li LinHuman Genetics, and.
Bing YaoHuman Genetics, and.
Lina SongFrom the Departments of Biochemistry.
Irma van Diethe Department of Molecular Cell Biology and Immunology, VU University Medical Center, Amsterdam, The Netherlands.
Arlene B ChapmanMedicine, Emory University School of Medicine, Atlanta, Georgia 30322 and.
Richard D CummingsFrom the Departments of Biochemistry.
Peng JinHuman Genetics, and.
Tongzhong JuFrom the Departments of Biochemistry, tju@emory.edu.
Institute of Human Genetics · PLEmory University · US

Funding

Genetic Basis of Non-Familial IgA NephropathyR01DK080876 · NIDDK · EMORY UNIVERSITY · PI JU, TONGZHONG · 2008 to 2012
$1.5M
NIDDK NIH HHS R01 DK080876NIDDK NIH HHS R01DK80876
6 · The paper itself

Abstract

The T-synthase (core 1 β3-galactosyltransferase) and its molecular chaperone Cosmc regulate the biosynthesis of mucin type O-glycans on glycoproteins, and evidence suggests that both T-synthase and Cosmc are transcriptionally suppressed in several human diseases, although the transcriptional regulation of these two genes is not understood. Here, we characterized the promoters essential for human Cosmc and T-synthase transcription. The upstream regions of the genes lack a conventional TATA box but contain CpG islands, cCpG-I and cCpG-II for Cosmc and tCpG for T-synthase. Using luciferase reporter assays, site-directed mutagenesis, ChIP assays, and mithramycin A treatment, we identified the core promoters within cCpG-II and tCpG, which contain two binding sites for Krüppel-like transcription factors, including SP1/SP3, respectively. Methylome analysis of Tn4 B cells, which harbor a silenced Cosmc, confirmed the hypermethylation of the Cosmc core promoter but not for T-synthase. These results demonstrate that Cosmc and T-synthase are transcriptionally regulated at a basal level by the specificity protein/Krüppel-like transcription factor family of members, which explains their ubiquitous and coordinated expression, and also indicate that they are differentially epigenetically regulated beyond X chromosome imprinting. These results are important in understanding the regulation of these genes that have roles in human diseases, such as IgA nephropathy and cancer.

Indexed as

Base SequenceBinding SitesCpG IslandsDNA MethylationEpigenesis, GeneticGalactosyltransferasesGC Rich SequenceGene Expression Regulation, EnzymologicHEK293 CellsHumansMolecular ChaperonesMolecular Sequence DataPromoter Regions, GeneticSequence Analysis, DNASp1 Transcription FactorSp3 Transcription FactorC1GALT1C1 protein, humanC1GALT1 protein, humanGalactosyltransferasesMolecular ChaperonesSP1 protein, humanSp1 Transcription FactorSP3 protein, humanSp3 Transcription FactorCosmcDNA methylationgene regulationglycosylationIgA nephropathypromotertranscriptionT-synthase

Identifiers

PMID26063800
PMCPMC4521027
OpenAlexW1502462023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.