Evidence map›Paper›PMID 26062845›Full record

ArticleScience translational medicine2015

Genetic variants associated with autoimmunity drive NFκB signaling and responses to inflammatory stimuli.

William J Housley, Salvador D Fernandez, Kenneth Vera, Sasidhar R Murikinati, Jaime Grutzendler, Nicole Cuerdon, Laura Glick, Phillip L De Jager, Mitja Mitrovic, Chris Cotsapas and 1 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Science translational medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03893344 (Detection of STAT4 in Multiple Sclerotic Patients by Polymerase Chain Reaction and Flow Cytometry), which is not on this map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03893344 completednot on this mapstarted 2019, after this paper: background citation

Detection of STAT4 in Multiple Sclerotic Patients by Polymerase Chain Reaction and Flow Cytometry

TypeobservationalSponsorAssiut UniversityRan2019 to 2020Enrolled104ConditionsMultiple SclerosisArmsdetection of STAT4 gene
3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 101 citations in OpenAlex.

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  19. A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

William J HousleyDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Salvador D FernandezDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Kenneth VeraDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Sasidhar R MurikinatiDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Jaime GrutzendlerDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Nicole CuerdonProgram in Translational NeuroPsychiatric Genomics, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Laura GlickProgram in Translational NeuroPsychiatric Genomics, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Phillip L De JagerProgram in Translational NeuroPsychiatric Genomics, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA. Broad Institute of Harvard University and Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Mitja MitrovicDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.
Chris CotsapasDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA. Broad Institute of Harvard University and Massachusetts Institute of Technology, Cambridge, MA 02142, USA. Department of Genetics, Yale School of Medicine, New Haven, CT 06511, USA.
David A HaflerDepartment of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA. Broad Institute of Harvard University and Massachusetts Institute of Technology, Cambridge, MA 02142, USA. david.hafler@yale.edu.
Harvard University · USMassachusetts Institute of Technology · US

Funding

Role of Negative Costimulation in Regulation of AutoimmunityP01AI039671 · NIAID · YALE UNIVERSITY · PI David A. Hafler · 1996 to 2026
$51.7M
TCR recognition of MHC class II peptide compexes in multiple sclerosisP01AI045757 · NIAID · DANA-FARBER CANCER INSTITUTE · PI WUCHERPFENNIG, KAI W · 1999 to 2017
$22.8M
Transgenic / Knock-out mouse coreP01AI073748 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI BEHAR, SAMUEL M · 2008 to 2019
$17.1M
INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
Gene Expression and Regulatory Networks in Human LeukocytesRC2GM093080 · NIGMS · HARVARD MEDICAL SCHOOL · PI BENOIST, CHRISTOPHE O., MATHIS, DIANE J · 2009 to 2010
$7.3M
Yale Rheumatic Diseases Research Core CenterP30AR053495 · NIAMS · YALE UNIVERSITY · PI SHLOMCHIK, WARREN D · 2007 to 2017
$7.0M
Regulatory T Cells in Autoimmune DiseaseU19AI070352 · NIAID · YALE UNIVERSITY · PI HAFLER, DAVID A. · 2006 to 2011
$5.9M
Treatment of Autoimmune Disease by Costimulatory Signal*U19AI046130 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KHOURY, SAMIA J. · 1999 to 2007
$5.6M
T Cell Recognition of Myelin in Multiple SclerosisR37NS024247 · NINDS · YALE UNIVERSITY · PI HAFLER, DAVID A. · 2004 to 2010
$2.8M
T CELLS IN THE CSF OF MULTIPLE SCLEROSIS PATIENTSR01NS024247 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI HAFLER, DAVID A. · 1987 to 2003
$1.2M
Exploring the consequences of the TNFRSF1A susceptibility allele for MSR01NS067305 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI DE JAGER, PHILIP L · 2009 to 2011
$1.2M
NIAID NIH HHS 5T32AI007019-36NIAID NIH HHS AI039671NIAID NIH HHS AI045757NIAID NIH HHS AI046130NIAID NIH HHS AI070352NIAID NIH HHS P01 AI039671NIAID NIH HHS P01 AI045757NIAID NIH HHS P01 AI073748NIAID NIH HHS T32 AI007019NIAID NIH HHS U19 AI046130NIAID NIH HHS U19 AI070352NIAMS NIH HHS P30 AR053495NIGMS NIH HHS GM093080NIGMS NIH HHS RC2 GM093080NINDS NIH HHS NS067305NINDS NIH HHS NS24247NINDS NIH HHS R01 NS024247NINDS NIH HHS R01 NS067305NINDS NIH HHS R37 NS024247
6 · The paper itself

Abstract

The transcription factor nuclear factor κB (NFκB) is a central regulator of inflammation, and genome-wide association studies in subjects with autoimmune disease have identified a number of variants within the NFκB signaling cascade. In addition, causal variant fine-mapping has demonstrated that autoimmune disease susceptibility variants for multiple sclerosis (MS) and ulcerative colitis are strongly enriched within binding sites for NFκB. We report that MS-associated variants proximal to NFκB1 and in an intron of TNFRSF1A (TNFR1) are associated with increased NFκB signaling after tumor necrosis factor-α (TNFα) stimulation. Both variants result in increased degradation of inhibitor of NFκB α (IκBα), a negative regulator of NFκB, and nuclear translocation of p65 NFκB. The variant proximal to NFκB1 controls signaling responses by altering the expression of NFκB itself, with the GG risk genotype expressing 20-fold more p50 NFκB and diminished expression of the negative regulators of the NFκB pathway: TNFα-induced protein 3 (TNFAIP3), B cell leukemia 3 (BCL3), and cellular inhibitor of apoptosis 1 (CIAP1). Finally, naïve CD4 T cells from patients with MS express enhanced activation of p65 NFκB. These results demonstrate that genetic variants associated with risk of developing MS alter NFκB signaling pathways, resulting in enhanced NFκB activation and greater responsiveness to inflammatory stimuli. As such, this suggests that rapid genetic screening for variants associated with NFκB signaling may identify individuals amenable to NFκB or cytokine blockade.

Indexed as

Genetic Predisposition to DiseaseAge FactorsAllelesAutoimmunityCase-Control StudiesCD4-Positive T-LymphocytesCell NucleusCytokinesFemaleHumansInflammationMaleMiddle AgedMultiple SclerosisNF-kappa BPolymorphism, Single NucleotideCytokinesNF-kappa BReceptors, Tumor Necrosis Factor, Type ITNF protein, humanTumor Necrosis Factor-alpha

Identifiers

PMID26062845
PMCPMC4574294
OpenAlexW1924891590

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.