Evidence map›Paper›PMID 26062745›Full record

ArticleJournal of experimental botany2015

The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A Butenko, Karina S Hornslien, Robert Kumpf, Reidunn B Aalen, Atle M Bones, Tore Brembu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 122 citations in OpenAlex.

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  2. Small Signaling Peptides inPlant direct · 2026
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  7. Advances of Peptides for Plant Immunity.Plants (Basel, Switzerland) · 2025
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  8. Article
  9. Peptide hormones in plants.Molecular horticulture · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Small Peptides: Orchestrators of Plant Growth and Developmental Processes.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Article
  17. Article
  18. Genetic regulation of lateral root development.Plant signaling & behavior · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ane Kjersti VieDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.
Javad NajafiDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.
Bin LiuDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.
Per WingeDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.
Melinka A ButenkoDepartment of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Karina S HornslienDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Robert KumpfDepartment of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Reidunn B AalenDepartment of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Atle M BonesDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway.ORCID http://orcid.org/0000-0003-0544-7437
Tore BrembuDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway tore.brembu@ntnu.no.ORCID http://orcid.org/0000-0001-5622-8037
Norwegian University of Science and Technology · NOUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peptide ligands play crucial roles in the life cycle of plants by modulating the innate immunity against pathogens and regulating growth and developmental processes. One well-studied example is INFLORESCENCE DEFICIENT IN ABSCISSION (IDA), which controls floral organ abscission and lateral root emergence in Arabidopsis thaliana. IDA belongs to a family of five additional IDA-LIKE (IDL) members that have all been suggested to be involved in regulation of Arabidopsis development. Here we present three novel members of the IDL subfamily and show that two of them are strongly and rapidly induced by different biotic and abiotic stresses. Furthermore, we provide data that the recently identified PAMP-INDUCED SECRETED PEPTIDE (PIP) and PIP-LIKE (PIPL) peptides, which show similarity to the IDL and C-TERMINALLY ENCODED PEPTIDE (CEP) peptides, are not only involved in innate immune response in Arabidopsis but are also induced by abiotic stress. Expression patterns of the IDA/IDL and PIP/PIPL genes were analysed using in silico data, qRT-PCR and GUS promoter lines. Transcriptomic responses to PIPL3 peptide treatment suggested a role in regulation of biotic stress responses and cell wall modification.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsPeptidesPhylogenySequence AlignmentStress, PhysiologicalArabidopsis ProteinsPeptidesArabidopsisevolutiongene expressionINFLORESCENCE DEFICIENT IN ABSCISSIONpeptide ligand.

Identifiers

PMID26062745
PMCPMC4526919
OpenAlexW1929187256

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.