Evidence map›Paper›PMID 26062721›Full record

ArticleEpidemiology and infection2016

Prevalent high-risk HPV infection and vaginal microbiota in Nigerian women.

E O Dareng, B Ma, A O Famooto, S N Adebamowo, R A Offiong, O Olaniyan, P S Dakum, C M Wheeler, D Fadrosh, H Yang and 4 more

Abstract read
In one paragraph

Article in Epidemiology and infection, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Vaginal microbiota stability over 18 months in young student women in France.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Trial
  5. Trial
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Microbiome, Human Papillomavirus and Cervical Carcinogenesis.Current topics in microbiology and immunology · 2026
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. The role of neighborhood deprivation in the cervicovaginal microbiota.American journal of obstetrics & gynecology MFM · 2024
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

E O DarengOffice of Strategic Information,Research and Training,Institute of Human Virology,Abuja,Nigeria.
B MaInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
A O FamootoOffice of Strategic Information,Research and Training,Institute of Human Virology,Abuja,Nigeria.
S N AdebamowoOffice of Strategic Information,Research and Training,Institute of Human Virology,Abuja,Nigeria.
R A OffiongUniversity of Abuja Teaching Hospital,Gwagwalada,Nigeria.
O OlaniyanNational Hospital,Abuja,Nigeria.
P S DakumOffice of Strategic Information,Research and Training,Institute of Human Virology,Abuja,Nigeria.
C M WheelerDepartment of Pathology,University of New Mexico Health Sciences Centre,Albuquerque,NM,USA.
D FadroshInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
H YangInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
P GajerInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
R M BrotmanInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
J RavelInstitute for Genome Sciences,University of Maryland School of Medicine,Baltimore,MD,USA.
C A AdebamowoDepartment of Nutrition,Harvard School of Public Health,Boston,MA,USA.

Funding

Serologic Biomarkers of Human Sexually Transmitted Infection and DiseaseU19AI084044 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI TERPLAN, MISHKA · 2009 to 2018
$22.8M
Web enhanced adoption of HPV vaccine in minority communitiesU19AI084081 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI STIDLEY, CHRISTINE A. · 2009 to 2013
$13.4M
The EPI-STI Biostatistics and Bioinformatics Core (Cuzick/Wheeler)U19AI113187 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI WHEELER, COSETTE MARIE · 2014 to 2018
$12.6M
African Collaborative Center for Microbiome and Genomics Research (ACCME)U54HG006947 · NHGRI · INSTITUTE OF HUMAN VIROLOGY · PI ADEBAMOWO, CLEMENT ADEBAYO · 2013 to 2018
$5.7M
Capacity Development for Research into AIDS Associated malignancies (CADRE)D43CA153792 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI ADEBAMOWO, CLEMENT ADEBAYO · 2010 to 2013
$1.8M
Molecular Epidemiology of the Vaginal MicrobiomeK01AI080974 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI BROTMAN, REBECCA M. · 2010 to 2014
$644k
NCI NIH HHS 1D43CA153792NCI NIH HHS D43 CA153792NHGRI NIH HHS 1U54HG006947-01A1NHGRI NIH HHS U54 HG006947NIAID NIH HHS K01 AI080974NIAID NIH HHS K01AI080974NIAID NIH HHS U19 AI084044NIAID NIH HHS U19AI084044NIAID NIH HHS U19 AI084081NIAID NIH HHS U19 AI113187
6 · The paper itself

Abstract

In this study, we evaluated the association between high-risk human papillomavirus (hrHPV) and the vaginal microbiome. Participants were recruited in Nigeria between April and August 2012. Vaginal bacterial composition was characterized by deep sequencing of barcoded 16S rRNA gene fragments (V4) on Illumina MiSeq and HPV was identified using the Roche Linear Array® HPV genotyping test. We used exact logistic regression models to evaluate the association between community state types (CSTs) of vaginal microbiota and hrHPV infection, weighted UniFrac distances to compare the vaginal microbiota of individuals with prevalent hrHPV to those without prevalent hrHPV infection, and the Linear Discriminant Analysis effect size (LEfSe) algorithm to characterize bacteria associated with prevalent hrHPV infection. We observed four CSTs: CST IV-B with a low relative abundance of Lactobacillus spp. in 50% of participants; CST III (dominated by L. iners) in 39·2%; CST I (dominated by L. crispatus) in 7·9%; and CST VI (dominated by proteobacteria) in 2·9% of participants. LEfSe analysis suggested an association between prevalent hrHPV infection and a decreased abundance of Lactobacillus sp. with increased abundance of anaerobes particularly of the genera Prevotella and Leptotrichia in HIV-negative women (P < 0·05). These results are hypothesis generating and further studies are required.

Indexed as

MicrobiotaAdolescentAdultAgedDNA, BacterialFemaleGenotypeHumansMiddle AgedNigeriaPapillomaviridaePapillomavirus InfectionsPrevalenceRNA, Ribosomal, 16SVaginaYoung AdultDNA, BacterialRNA, Ribosomal, 16SHIV/AIDShuman papilloma virus (HPV)public health

Identifiers

PMID26062721
PMCPMC4659743

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.