Evidence map›Paper›PMID 26061898›Full record

ArticleBiochemistry2015

The Structure of an Oxalate Oxidoreductase Provides Insight into Microbial 2-Oxoacid Metabolism.

Marcus I Gibson, Edward J Brignole, Elizabeth Pierce, Mehmet Can, Stephen W Ragsdale, Catherine L Drennan

Open access · bronzeAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  8. Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase fromProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Article
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  11. Review
  12. Article
  13. One-carbon chemistry of oxalate oxidoreductase captured by X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Marcus I Gibson†Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States.
Edward J Brignole†Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States.
Elizabeth Pierce§Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.
Mehmet Can§Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.
Stephen W Ragsdale§Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.
Catherine L Drennan†Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States.
University of Michigan–Ann Arbor · USMassachusetts Institute of Technology · USHoward Hughes Medical Institute · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Enzymology of the Reductive Acetyl-CoA PathwayR37GM039451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGSDALE, STEPHEN WILEY · 2012 to 2021
$4.0M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR01GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN WILEY · 1991 to 2011
$3.6M
Complex Metallocluster Structure and AssemblyR01GM069857 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DRENNAN, CATHERINE L · 2004 to 2017
$3.1M
MECHANISMS OF METHYL TRANSFERS IN ACETYL-COA SYNTHESISR29GM039451 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI RAGSDALE, STEPHEN W · 1988 to 1991
–
NIGMS NIH HHS GM069857NIGMS NIH HHS GM39451NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM069857NIGMS NIH HHS R37 GM039451
6 · The paper itself

Abstract

Thiamine pyrophosphate (TPP), a derivative of vitamin B1, is a versatile and ubiquitous cofactor. When coupled with [4Fe-4S] clusters in microbial 2-oxoacid:ferredoxin oxidoreductases (OFORs), TPP is involved in catalyzing low-potential redox reactions that are important for the synthesis of key metabolites and the reduction of N2, H(+), and CO2. We have determined the high-resolution (2.27 Å) crystal structure of the TPP-dependent oxalate oxidoreductase (OOR), an enzyme that allows microbes to grow on oxalate, a widely occurring dicarboxylic acid that is found in soil and freshwater and is responsible for kidney stone disease in humans. OOR catalyzes the anaerobic oxidation of oxalate, harvesting the low-potential electrons for use in anaerobic reduction and fixation of CO2. We compare the OOR structure to that of the only other structurally characterized OFOR family member, pyruvate:ferredoxin oxidoreductase. This side-by-side structural analysis highlights the key similarities and differences that are relevant for the chemistry of this entire class of TPP-utilizing enzymes.

Indexed as

Models, MolecularMoorellaOxalatesOxidoreductasesProtein ConformationThiamine PyrophosphateOxalatesOxidoreductasesThiamine Pyrophosphate

Identifiers

PMID26061898
PMCPMC4498597
OpenAlexW2222580750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.