Evidence map›Paper›PMID 26060429›Full record

ArticleThe plant pathology journal2015

Construction of a High-Quality Yeast Two-Hybrid Library and Its Application in Identification of Interacting Proteins with Brn1 in Curvularia lunata.

Jin-Xin Gao, Jing Jing, Chuan-Jin Yu, Jie Chen

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Construction of Shoot Apical Meristem cDNA Yeast Library ofCurrent issues in molecular biology · 2024
    Article
  4. Article
  5. ACS omega · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Characterization ofThe plant pathology journal · 2019
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jin-Xin GaoSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 200240, P. R. China ; State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, Shanghai 200240, P. R. China.
Jing JingSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 200240, P. R. China ; State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, Shanghai 200240, P. R. China.
Chuan-Jin YuSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 200240, P. R. China ; State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, Shanghai 200240, P. R. China.
Jie ChenSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai 200240, P. R. China ; State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University, Shanghai 200240, P. R. China.
Shanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Curvularia lunata is an important maize foliar fungal pathogen that distributes widely in maize growing area in China, and several key pathogenic factors have been isolated. An yeast two-hybrid (Y2H) library is a very useful platform to further unravel novel pathogenic factors in C. lunata. To construct a high-quality full length-expression cDNA library from the C. lunata for application to pathogenesis-related protein-protein interaction screening, total RNA was extracted. The SMART (Switching Mechanism At 5' end of the RNA Transcript) technique was used for cDNA synthesis. Double-stranded cDNA was ligated into the pGADT7-Rec vector with Herring Testes Carrier DNA using homologous recombination method. The ligation mixture was transformed into competent yeast AH109 cells to construct the primary cDNA library. Eventually, a high qualitative library was successfully established according to an evaluation on quality. The transformation efficiency was about 6.39 ×10(5) transformants/3 μg pGADT7-Rec. The titer of the primary cDNA library was 2.5×10(8) cfu/mL. The numbers for the cDNA library was 2.46×10(5). Randomly picked clones show that the recombination rate was 88.24%. Gel electrophoresis results indicated that the fragments ranged from 0.4 kb to 3.0 kb. Melanin synthesis protein Brn1 (1,3,8-hydroxynaphthalene reductase) was used as a "bait" to test the sufficiency of the Y2H library. As a result, a cDNA clone encoding VelB protein that was known to be involved in the regulation of diverse cellular processes, including control of secondary metabolism containing melanin and toxin production in many filamentous fungi was identified. Further study on the exact role of the VelB gene is underway.

Indexed as

Brn1Curvularia lunatapathogenesis-related proteinVelBY2H library

Identifiers

PMID26060429
PMCPMC4453991
OpenAlexW2250152913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.