Evidence map›Paper›PMID 26059433›Full record

ReviewOncotarget2015

Initiation and termination of DNA replication during S phase in relation to cyclins D1, E and A, p21WAF1, Cdt1 and the p12 subunit of DNA polymerase δ revealed in individual cells by cytometry.

Zbigniew Darzynkiewicz, Hong Zhao, Sufang Zhang, Marietta Y W T Lee, Ernest Y C Lee, Zhongtao Zhang

Open access · diamondAbstract readReview
In one paragraph

Review in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 79 citations in OpenAlex.

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  10. CDKs Functional Analysis in Low Proliferating Early-Stage Pancreatic Ductal Adenocarcinoma.Journal of bioinformatics and systems biology : Open access · 2023
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  16. Effects of 445 nm, 520 nm, and 638 nm Laser Irradiation on the Dermal Cells.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zbigniew DarzynkiewiczBrander Cancer Research Institute, Department of Pathology, New York Medical College, Valhalla, NY.
Hong ZhaoBrander Cancer Research Institute, Department of Pathology, New York Medical College, Valhalla, NY.
Sufang ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY.
Marietta Y W T LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY.
Ernest Y C LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY.
Zhongtao ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, Valhalla, NY.
New York Medical College · USCancer Research Institute · US

Funding

BIOCHEMICAL STUDIES OF POLYMERASE DELTAR01GM031973 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEE, MARIETTA Y. · 1985 to 2012
$5.8M
Modification of DNA Polymerase Delta by a Novel Mechanism During Replication StreR01ES014737 · NIEHS · NEW YORK MEDICAL COLLEGE · PI LEE, MARIETTA Y., ZHANG, ZHONGTAO · 2008 to 2017
$3.5M
Modification of DNA Polymerase d by a Novel Mechanism During Replication StressR56ES014737 · NIEHS · NEW YORK MEDICAL COLLEGE · PI LEE, MARIETTA Y., ZHANG, ZHONGTAO · 2020 to 2020
$263k
NIEHS NIH HHS ES14737NIEHS NIH HHS R01 ES014737NIEHS NIH HHS R56 ES014737NIGMS NIH HHS GM31973NIGMS NIH HHS R01 GM031973
6 · The paper itself

Abstract

During our recent studies on mechanism of the regulation of human DNA polymerase δ in preparation for DNA replication or repair, multiparameter imaging cytometry as exemplified by laser scanning cytometry (LSC) has been used to assess changes in expression of the following nuclear proteins associated with initiation of DNA replication: cyclin A, PCNA, Ki-67, p21(WAF1), DNA replication factor Cdt1 and the smallest subunit of DNA polymerase δ, p12. In the present review, rather than focusing on Pol δ, we emphasize the application of LSC in these studies and outline possibilities offered by the concurrent differential analysis of DNA replication in conjunction with expression of the nuclear proteins. A more extensive analysis of the data on a correlation between rates of EdU incorporation, likely reporting DNA replication, and expression of these proteins, is presently provided. New data, specifically on the expression of cyclin D1 and cyclin E with respect to EdU incorporation as well as on a relationship between expression of cyclin A vs. p21(WAF1) and Ki-67 vs. Cdt1, are also reported. Of particular interest is the observation that this approach makes it possible to assess the temporal sequence of degradation of cyclin D1, p21(WAF1), Cdt1 and p12, each with respect to initiation of DNA replication and with respect to each other. Also the sequence or reappearance of these proteins in G2 after termination of DNA replication is assessed. The reviewed data provide a more comprehensive presentation of potential markers, whose presence or absence marks the DNA replicating cells. Discussed is also usefulness of these markers as indicators of proliferative activity in cancer tissues that may bear information on tumor progression and have a prognostic value.

Indexed as

AnimalsCell Cycle ProteinsCyclin ACyclin D1Cyclin-Dependent Kinase Inhibitor p21Cyclin EDNA Polymerase IIIDNA ReplicationHumansLaser Scanning CytometryS PhaseCDKN1A protein, humanCDT1 protein, humanCell Cycle ProteinsCyclin ACyclin D1Cyclin-Dependent Kinase Inhibitor p21Cyclin EDNA Polymerase IIIPOLD4 protein, humancell cyclecell proliferationDNA replicationEdU labelinglaser scanning cytometrypolymerase δS-phase

Identifiers

PMID26059433
PMCPMC4494901
OpenAlexW1936662132

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.