Evidence map›Paper›PMID 26058392›Full record

ArticleGenome biology and evolution2015

Spider Transcriptomes Identify Ancient Large-Scale Gene Duplication Event Potentially Important in Silk Gland Evolution.

Thomas H Clarke, Jessica E Garb, Cheryl Y Hayashi, Peter Arensburger, Nadia A Ayoub

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Gene and Genome Duplication in Spiders.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Review
  3. Review
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  7. Global gradients in the distribution of animal polyploids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
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  15. Article
  16. Widow spiders in the New World: a review onThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Thomas H ClarkeDepartment of Biology, Washington & Lee University clarket@wlu.edu.
Jessica E GarbDepartment of Biological Sciences, University of Massachusetts, Lowell.
Cheryl Y HayashiDepartment of Biology, University of California, Riverside.
Peter ArensburgerDepartment of Biological Sciences, California State Polytechnic University, Pomona.
Nadia A AyoubDepartment of Biology, Washington & Lee University.
California State Polytechnic University · USUniversity of California, Riverside · USUniversity of Massachusetts Lowell · USWashington and Lee University · US

Funding

Discovering Biomedically Significant Spider Venom Toxins with GenomicsR15GM097714 · NIGMS · UNIVERSITY OF MASSACHUSETTS LOWELL · PI GARB, JESSICA ELLEN · 2011 to 2015
$611k
Molecular evolution of latrotoxins: neurotoxins from black widow spider venomF32GM083661 · NIGMS · UNIVERSITY OF ARIZONA · PI GARB, JESSICA · 2007 to 2009
$91k
Convergent Molecular Evolution of Moth and Spider SilksF32GM078875 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI AYOUB, NADIA A · 2007 to 2009
$85k
NIGMS NIH HHS 1F32GM083661-01NIGMS NIH HHS 1R15GM097714-01NIGMS NIH HHS F32 GM078875NIGMS NIH HHS F32 GM083661NIGMS NIH HHS F32 GM78875-1ANIGMS NIH HHS R15 GM097714
6 · The paper itself

Abstract

The evolution of specialized tissues with novel functions, such as the silk synthesizing glands in spiders, is likely an influential driver of adaptive success. Large-scale gene duplication events and subsequent paralog divergence are thought to be required for generating evolutionary novelty. Such an event has been proposed for spiders, but not tested. We de novo assembled transcriptomes from three cobweb weaving spider species. Based on phylogenetic analyses of gene families with representatives from each of the three species, we found numerous duplication events indicative of a whole genome or segmental duplication. We estimated the age of the gene duplications relative to several speciation events within spiders and arachnids and found that the duplications likely occurred after the divergence of scorpions (order Scorpionida) and spiders (order Araneae), but before the divergence of the spider suborders Mygalomorphae and Araneomorphae, near the evolutionary origin of spider silk glands. Transcripts that are expressed exclusively or primarily within black widow silk glands are more likely to have a paralog descended from the ancient duplication event and have elevated amino acid replacement rates compared with other transcripts. Thus, an ancient large-scale gene duplication event within the spider lineage was likely an important source of molecular novelty during the evolution of silk gland-specific expression. This duplication event may have provided genetic material for subsequent silk gland diversification in the true spiders (Araneomorphae).

Indexed as

Evolution, MolecularGene DuplicationAnimalsGene Expression ProfilingHigh-Throughput Nucleotide SequencingMultigene FamilySequence Analysis, DNASilkSpidersSilkexpressionLatrodectusneofunctionalizationpatterns of selectionSteatodaTheridiidae

Identifiers

PMID26058392
PMCPMC4524477
OpenAlexW1953774652

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.