Evidence map›Paper›PMID 26057814›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

A preliminary X-ray study of 3-deoxy-D-manno-oct-2-ulosonic acid 8-phosphate phosphatase (YrbI) from Burkholderia pseudomallei.

Jimin Park, Daeun Lee, Mi Sun Kim, Dae Yong Kim, Dong Hae Shin

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Biofilm Signaling, Composition and Regulation inJournal of microbiology and biotechnology · 2023
    Review
  2. A study of Rose Bengal against a 2-keto-3-deoxy-d-Journal of enzyme inhibition and medicinal chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jimin ParkGlobal Top 5 Research Program, College of Pharmacy, Ewha Womans University, Seoul 120-750, Republic of Korea.
Daeun LeeGlobal Top 5 Research Program, College of Pharmacy, Ewha Womans University, Seoul 120-750, Republic of Korea.
Mi Sun KimGlobal Top 5 Research Program, College of Pharmacy, Ewha Womans University, Seoul 120-750, Republic of Korea.
Dae Yong Kim402-803 Technopark, 65 Pyeongchon-ro, Wonmi-gu, Bucheon-si, Gyeonggi-do 420-734, Republic of Korea.
Dong Hae ShinGlobal Top 5 Research Program, College of Pharmacy, Ewha Womans University, Seoul 120-750, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

3-Deoxy-D-manno-oct-2-ulosonic acid 8-phosphate phosphatase (YrbI), the third enzyme in the pathway for the biosynthesis of 3-deoxy-D-manno-oct-2-ulosonic acid (KDO), hydrolyzes KDO 8-phosphate to KDO and inorganic phosphate. YrbI belongs to the haloacid dehalogenase (HAD) superfamily, which is a large family of magnesium-dependent phosphatase/phosphotransferase enzymes. In this study, YrbI from Burkholderia pseudomallei, the causative agent of melioidosis, has been cloned, expressed, purified and crystallized. Synchrotron X-ray data were also collected to 2.25 Å resolution. The crystal belonged to the primitive orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 63.7, b = 97.5, c = 98.0 Å. A full structural determination is in progress to elucidate the structure-function relationship of this protein.

Indexed as

Bacterial ProteinsBurkholderia pseudomalleiCloning, MolecularCrystallizationCrystallography, X-RayEscherichia coliGene ExpressionPhosphoric Monoester HydrolasesRecombinant Proteins3-deoxy-manno-octulosonate-8-phosphataseBacterial ProteinsPhosphoric Monoester HydrolasesRecombinant Proteins3-deoxy-d-manno-oct-2-ulosonic acid 8-phosphate phosphataseBurkholderia pseudomalleiYrbI

Identifiers

PMID26057814
PMCPMC4461349

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.