Evidence map›Paper›PMID 26057799›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

The structure of a contact-dependent growth-inhibition (CDI) immunity protein from Neisseria meningitidis MC58.

Kemin Tan, Parker M Johnson, Lucy Stols, Bryan Boubion, William Eschenfeldt, Gyorgy Babnigg, Christopher S Hayes, Andrezj Joachimiak, Celia W Goulding

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. A widespread family of molecular chaperones promotes the intracellular stability of type VIIb secretion system-exported toxins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Contact-Dependent Growth Inhibition in Bacteria: Do Not Get Too Close!International journal of molecular sciences · 2020
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kemin TanMidwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL 60439, USA.
Parker M JohnsonDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA.
Lucy StolsMidwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL 60439, USA.
Bryan BoubionDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA.
William EschenfeldtMidwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL 60439, USA.
Gyorgy BabniggMidwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL 60439, USA.
Christopher S HayesDepartment of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA.
Andrezj JoachimiakMidwest Center for Structural Genomics, Argonne National Laboratory, Argonne, IL 60439, USA.
Celia W GouldingDepartment of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA.
Argonne National Laboratory · USUniversity of California, Irvine · USUniversity of California, Santa Barbara · US

Funding

Midwest Center for Structural GenomicsU54GM094585 · NIGMS · UNIVERSITY OF CHICAGO · PI ORENGO, CHRISTINE · 2010 to 2014
$33.7M
Structure-function analysis of polymorphic CDI toxin-immunity protein complexes aU01GM102318 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GOULDING, CELIA · 2012 to 2016
$1.7M
NIGMS NIH HHS GM094585NIGMS NIH HHS GM102318NIGMS NIH HHS U01 GM102318NIGMS NIH HHS U54 GM094585
6 · The paper itself

Abstract

Contact-dependent growth inhibition (CDI) is an important mechanism of intercellular competition between neighboring Gram-negative bacteria. CDI systems encode large surface-exposed CdiA effector proteins that carry a variety of C-terminal toxin domains (CdiA-CTs). All CDI(+) bacteria also produce CdiI immunity proteins that specifically bind to the cognate CdiA-CT and neutralize its toxin activity to prevent auto-inhibition. Here, the X-ray crystal structure of a CdiI immunity protein from Neisseria meningitidis MC58 is presented at 1.45 Å resolution. The CdiI protein has structural homology to the Whirly family of RNA-binding proteins, but appears to lack the characteristic nucleic acid-binding motif of this family. Sequence homology suggests that the cognate CdiA-CT is related to the eukaryotic EndoU family of RNA-processing enzymes. A homology model is presented of the CdiA-CT based on the structure of the XendoU nuclease from Xenopus laevis. Molecular-docking simulations predict that the CdiA-CT toxin active site is occluded upon binding to the CdiI immunity protein. Together, these observations suggest that the immunity protein neutralizes toxin activity by preventing access to RNA substrates.

Indexed as

Amino Acid MotifsAnimalsAntibiosisBacterial ToxinsContact InhibitionCrystallography, X-RayEndoribonucleasesEscherichia coliEscherichia coli ProteinsGene ExpressionMolecular Docking SimulationMolecular Sequence DataNeisseria meningitidisProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryBacterial ToxinsCdiI protein, E coliEndoribonucleasesENDOU protein, XenopusEscherichia coli ProteinsRecombinant ProteinsXenopus ProteinsCdiA-CT toxin domainCdiI immunity proteincontact-dependent growth inhibitiondocking studiesNeisseria meningitidistoxin–immunity protein complex

Identifiers

PMID26057799
PMCPMC4461334
OpenAlexW1930197038

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.