Evidence map›Paper›PMID 26057665›Full record

ArticleActa crystallographica. Section D, Biological crystallography2015

In meso in situ serial X-ray crystallography of soluble and membrane proteins.

Chia Ying Huang, Vincent Olieric, Pikyee Ma, Ezequiel Panepucci, Kay Diederichs, Meitian Wang, Martin Caffrey

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 111 citations in OpenAlex.

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  7. Native SAD phasing at room temperature.Acta crystallographica. Section D, Structural biology · 2022
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  11. Crystallographic Studies of Rhodopsins: Structure and Dynamics.Methods in molecular biology (Clifton, N.J.) · 2022
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  14. A fully automated crystallization apparatus for small protein quantities.Acta crystallographica. Section F, Structural biology communications · 2021
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  15. Low-doseIUCrJ · 2020
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  17. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
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  18. 3D-printed holders forJournal of applied crystallography · 2020
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  19. Review
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Chia Ying HuangMembrane Structural and Functional Biology Group, Schools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Vincent OliericSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Pikyee MaMembrane Structural and Functional Biology Group, Schools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Ezequiel PanepucciSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Kay DiederichsFachbereich Biologie, Universität Konstanz, M647, D-78457 Konstanz, Germany.
Meitian WangSwiss Light Source, Paul Scherrer Institute, CH-5232 Villigen, Switzerland.
Martin CaffreyMembrane Structural and Functional Biology Group, Schools of Medicine and Biochemistry and Immunology, Trinity College, Dublin, Ireland.
Paul Scherrer Institute · CHTrinity College Dublin · IEUniversity of Konstanz · DE

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
Center for the Rational Design of Membrane Protein CrystallographyU54GM094599 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2014
$6.8M
Membrane Proteins. Crystallogenesis/X-ray Structure(RMI)R01GM075915 · NIGMS · UNIVERSITY OF LIMERICK · PI CAFFREY, MARTIN D. · 2005 to 2009
$984k
NIGMS NIH HHS GM75915NIGMS NIH HHS P50 GM073210NIGMS NIH HHS P50GM073210NIGMS NIH HHS R01 GM075915NIGMS NIH HHS U54 GM094599NIGMS NIH HHS U54GM094599
6 · The paper itself

Abstract

The lipid cubic phase (LCP) continues to grow in popularity as a medium in which to generate crystals of membrane (and soluble) proteins for high-resolution X-ray crystallographic structure determination. To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listings are some of the highest profile membrane proteins, including the β2-adrenoreceptor-Gs protein complex that figured in the award of the 2012 Nobel Prize in Chemistry to Lefkowitz and Kobilka. The most successful in meso protocol to date uses glass sandwich crystallization plates. Despite their many advantages, glass plates are challenging to harvest crystals from. However, performing in situ X-ray diffraction measurements with these plates is not practical. Here, an alternative approach is described that provides many of the advantages of glass plates and is compatible with high-throughput in situ measurements. The novel in meso in situ serial crystallography (IMISX) method introduced here has been demonstrated with AlgE and PepT (alginate and peptide transporters, respectively) as model integral membrane proteins and with lysozyme as a test soluble protein. Structures were solved by molecular replacement and by experimental phasing using bromine SAD and native sulfur SAD methods to resolutions ranging from 1.8 to 2.8 Å using single-digit microgram quantities of protein. That sulfur SAD phasing worked is testament to the exceptional quality of the IMISX diffraction data. The IMISX method is compatible with readily available, inexpensive materials and equipment, is simple to implement and is compatible with high-throughput in situ serial data collection at macromolecular crystallography synchrotron beamlines worldwide. Because of its simplicity and effectiveness, the IMISX approach is likely to supplant existing in meso crystallization protocols. It should prove particularly attractive in the area of ligand screening for drug discovery and development.

Indexed as

Crystallography, X-RayMembrane ProteinsProtein ConformationMembrane ProteinsAlgEbromine SADexperimental phasingin mesoin situlipid cubic phasemembrane proteinmesophasePepTStserial crystallographysulfur SAD

Identifiers

PMID26057665
PMCPMC4461204
OpenAlexW2110278629

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.