ArticleScientific reports2015
The radish genome and comprehensive gene expression profile of tuberous root formation and development.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.
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Who cites it
93 citing papers in PubMed.
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- Integrated metabolome analysis and transcript profiles revealed a potential role of SWEETs in sugar accumulation during Carrot taproot development.BMC plant biology · 2025Article
- Proteome and Metabolome Alterations in Radish (Biomolecules · 2025Article
- Susceptibility of Oilseed Radish (Pathogens (Basel, Switzerland) · 2024Article
- Genome-wide characterization, functional analysis, and expression profiling of the Aux/IAA gene family in spinach.BMC genomics · 2024Article
- A two-sequence motif-based method for the inventory of gene families in fragmented and poorly annotated genome sequences.BMC genomics · 2024Article
- Systematic analysis of Heat Shock Protein 70 (HSP70) gene family in radish and potential roles in stress tolerance.BMC plant biology · 2024Article
- Exogenous gibberellin suppressed taproot secondary thickening by inhibiting the formation and maintenance of vascular cambium in radish (Frontiers in plant science · 2024Article
- Vibration and Slope Conditions during Harvesting Affect Radish Mass Measurements for Yield Monitoring: An Experimental Study Using a Laboratory Test Bench.Sensors (Basel, Switzerland) · 2023Article
- Hormones and carbohydrates synergistically regulate the formation of swollen roots in a Chinese cabbage translocation line.Horticulture research · 2023Article
- Transcriptome profiling reveals the genes involved in tuberous root expansion in Pueraria (Pueraria montana var. thomsonii).BMC plant biology · 2023Article
- A chromosome-level genome assembly of radish (Raphanus sativus L.) reveals insights into genome adaptation and differential bolting regulation.Plant biotechnology journal · 2023Article
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- Combining Metabolomics and Transcriptomics to Reveal the Regulatory Mechanism of Taproot Enlargement inInternational journal of molecular sciences · 2023Article
- Epistatic interactions among multiple copies ofAoB PLANTS · 2023Article
- Form and contour: breeding and genetics of organ shape from wild relatives to modern vegetable crops.Frontiers in plant science · 2023Review
- Dynamic profiling of intact glucosinolates in radish by combining UHPLC-HRMS/MS and UHPLC-QqQ-MS/MS.Frontiers in plant science · 2023Article
- Integration of metabolome and transcriptome analyses reveals the mechanism of anthocyanin accumulation in purple radish leaves.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae.The New phytologist · 2022Article
33 more citing papers are in PubMed but not listed here.
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18 authors.
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Abstract
Understanding the processes that regulate plant sink formation and development at the molecular level will contribute to the areas of crop breeding, food production and plant evolutionary studies. We report the annotation and analysis of the draft genome sequence of the radish Raphanus sativus var. hortensis (long and thick root radish) and transcriptome analysis during root development. Based on the hybrid assembly approach of next-generation sequencing, a total of 383 Mb (N50 scaffold: 138.17 kb) of sequences of the radish genome was constructed containing 54,357 genes. Syntenic and phylogenetic analyses indicated that divergence between Raphanus and Brassica coincide with the time of whole genome triplication (WGT), suggesting that WGT triggered diversification of Brassiceae crop plants. Further transcriptome analysis showed that the gene functions and pathways related to carbohydrate metabolism were prominently activated in thickening roots, particularly in cell proliferating tissues. Notably, the expression levels of sucrose synthase 1 (SUS1) were correlated with root thickening rates. We also identified the genes involved in pungency synthesis and their transcription factors.
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