Evidence map›Paper›PMID 26055717›Full record

ArticleThe Journal of biological chemistry2015

Yeast Fex1p Is a Constitutively Expressed Fluoride Channel with Functional Asymmetry of Its Two Homologous Domains.

Kathryn D Smith, Patricia B Gordon, Alberto Rivetta, Kenneth E Allen, Tetyana Berbasova, Clifford Slayman, Scott A Strobel

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
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  4. Review
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  9. Article
  10. Article
  11. Article
  12. International journal of molecular sciences · 2022
    Article
  13. Article
  14. Article
  15. Membrane Exporters of Fluoride Ion.Annual review of biochemistry · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kathryn D SmithFrom the Departments of Molecular Biophysics and Biochemistry.
Patricia B GordonFrom the Departments of Molecular Biophysics and Biochemistry.
Alberto RivettaCellular and Molecular Physiology.
Kenneth E AllenGenetics, and.
Tetyana BerbasovaFrom the Departments of Molecular Biophysics and Biochemistry.
Clifford SlaymanCellular and Molecular Physiology.
Scott A StrobelFrom the Departments of Molecular Biophysics and Biochemistry, Chemistry, Yale University, New Haven, Connecticut 06520 scott.strobel@yale.edu.

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
NONCANONICAL BASE PAIRS IN RNA FOLDING AND CATALYSISR01GM054839 · NIGMS · YALE UNIVERSITY · PI STROBEL, SCOTT A · 1996 to 2015
$4.2M
STRUCTURE AND FUNCTION OF K+ CARRIER-CHANNELS IN YEASTR01GM060696 · NIGMS · YALE UNIVERSITY · PI SLAYMAN, CLIFFORD L · 2000 to 2003
$936k
NIGMS NIH HHS GM022778NIGMS NIH HHS GM60696NIGMS NIH HHS P01 GM022778NIGMS NIH HHS R01 GM054839NIGMS NIH HHS R01 GM060696
6 · The paper itself

Abstract

Fluoride is a ubiquitous environmental toxin with which all biological species must cope. A recently discovered family of fluoride export (FEX) proteins protects organisms from fluoride toxicity by removing it from the cell. We show here that FEX proteins in Saccharomyces cerevisiae function as ion channels that are selective for fluoride over chloride and that these proteins are constitutively expressed at the yeast plasma membrane. Continuous expression is in contrast to many other toxin exporters in yeast, and this, along with the fact that two nearly duplicate proteins are encoded in the yeast genome, suggests that the threat posed by fluoride ions is frequent and detrimental. Structurally, eukaryotic FEX proteins consist of two homologous four-transmembrane helix domains folded into an antiparallel dimer, where the orientation of the two domains is fixed by a single transmembrane linker helix. Using phylogenetic sequence conservation as a guide, we have identified several functionally important residues. There is substantial functional asymmetry in the effect of mutation at corresponding sites in the two domains. Specifically, mutations to residues in the C-terminal domain proved significantly more detrimental to function than did similar mutations in the N-terminal domain. Our data suggest particular residues that may be important to anion specificity, most notably the necessity of a positive charge near the end of TMH1 in the C-terminal domain. It is possible that a cationic charge at this location may create an electrostatic well for fluoride ions entering the channel from the cytoplasm.

Indexed as

Gene Expression Regulation, FungalGenome, FungalAmino Acid SequenceCell MembraneConserved SequenceDrug Resistance, FungalEscherichia coliFluoridesGene ExpressionIon TransportMembrane ProteinsMolecular Sequence DataMutationPatch-Clamp TechniquesPhosphorylationPhylogenyFex1 protein, S cerevisiaeFluoridesMembrane ProteinsRecombinant ProteinsSaccharomyces cerevisiae Proteinsanion transportFEXFlucfluorideion channelmembrane transportmicroscopypatch clamptopology

Identifiers

PMID26055717
PMCPMC4528147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.