Evidence map›Paper›PMID 26054059›Full record

ArticleScientific reports2015

Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2.

Andrea Piserchio, Venkatesh Ramakrishan, Hsin Wang, Tamer S Kaoud, Boris Arshava, Kaushik Dutta, Kevin N Dalby, Ranajeet Ghose

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Andrea PiserchioDepartment of Chemistry, The City College of New York, New York, NY 10031.
Venkatesh RamakrishanDepartment of Chemistry, The City College of New York, New York, NY 10031.
Hsin WangDepartment of Chemistry, The City College of New York, New York, NY 10031.
Tamer S Kaoud1] Division of Medicinal Chemistry, University of Texas, Austin, TX 78712 [2] Department of Medicinal Chemistry, Faculty of Pharmacy, Minia University, El-Minia 61519, Egypt.
Boris ArshavaDepartment of Chemistry, The College of Staten Island, Staten Island, NY 10314.
Kaushik DuttaThe New York Structural Biology Center, New York, NY 10027.
Kevin N DalbyDivision of Medicinal Chemistry, University of Texas, Austin, TX 78712.
Ranajeet Ghose1] Department of Chemistry, The City College of New York, New York, NY 10031 [2] Graduate Center of CUNY, New York, NY 10016.
City College of New York · USThe University of Texas at Austin · USCollege of Staten Island · USNew York Structural Biology Center · USThe Graduate Center, CUNY · US

Funding

TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI WALLMAN, JOSHUA · 1985 to 2011
$26.1M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Mechanism and Specificity of MAP KinasesR01GM059802 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI DALBY, KEVIN N · 2001 to 2011
$2.3M
Catalytic Domain Dynamics in Protein KinasesR01GM084278 · NIGMS · CITY COLLEGE OF NEW YORK · PI GHOSE, RANAJEET · 2009 to 2013
$1.6M
NCRR NIH HHS G12 RR003060NIGMS NIH HHS GM059802NIGMS NIH HHS GM084278NIGMS NIH HHS R01 GM059802NIGMS NIH HHS R01 GM084278NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

The F-recruitment site (FRS) of active ERK2 binds F-site (Phe-x-Phe-Pro) sequences found downstream of the Ser/Thr phospho-acceptor on cellular substrates. Here we apply NMR methods to analyze the interaction between active ERK2 (ppERK2), and a 13-residue F-site-bearing peptide substrate derived from its cellular target, the transcription factor Elk-1. Our results provide detailed insight into previously elusive structural and dynamic features of FRS/F-site interactions and FRS-driven substrate phosphorylation. We show that substrate F-site engagement significantly quenches slow dynamics involving the ppERK2 activation-loop and the FRS. We also demonstrate that the F-site phenylalanines make critical contacts with ppERK2, in contrast to the proline whose cis-trans isomerization has no significant effect on F-site recognition by the kinase FRS. Our results support a mechanism where phosphorylation of the disordered N-terminal phospho-acceptor is facilitated by its increased productive encounters with the ppERK2 active site due to docking of the proximal F-site at the kinase FRS.

Indexed as

Binding SitesCatalytic DomainDNAets-Domain Protein Elk-1HumansMitogen-Activated Protein Kinase 1Models, MolecularPhosphorylationProtein ConformationDNAELK1 protein, humanets-Domain Protein Elk-1MAPK1 protein, humanMitogen-Activated Protein Kinase 1

Identifiers

PMID26054059
PMCPMC4459106
OpenAlexW1550113325

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.