Evidence map›Paper›PMID 26053682›Full record

ArticlePloS one2015

Genomic Analysis and Surveillance of the Coronavirus Dominant in Ducks in China.

Qing-Ye Zhuang, Kai-Cheng Wang, Shuo Liu, Guang-Yu Hou, Wen-Ming Jiang, Su-Chun Wang, Jin-Ping Li, Jian-Min Yu, Ji-Ming Chen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. A nidovirus perspective on SARS-CoV-2.Biochemical and biophysical research communications · 2021
    Review
  10. Animal Coronaviruses in the Light of COVID-19.Journal of veterinary research · 2020
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Urbanization and the dynamics of RNA viruses in Mallards (Anas platyrhynchos).Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Qing-Ye ZhuangChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Kai-Cheng WangChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Shuo LiuChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Guang-Yu HouChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Wen-Ming JiangChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Su-Chun WangChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Jin-Ping LiChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Jian-Min YuChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
Ji-Ming ChenChina Animal Health and Epidemiology Center, Qingdao, 266032, China.
China Animal Health and Epidemiology Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic diversity, evolution, distribution, and taxonomy of some coronaviruses dominant in birds other than chickens remain enigmatic. In this study we sequenced the genome of a newly identified coronavirus dominant in ducks (DdCoV), and performed a large-scale surveillance of coronaviruses in chickens and ducks using a conserved RT-PCR assay. The viral genome harbors a tandem repeat which is rare in vertebrate RNA viruses. The repeat is homologous to some proteins of various cellular organisms, but its origin remains unknown. Many substitutions, insertions, deletions, and some frameshifts and recombination events have occurred in the genome of the DdCoV, as compared with the coronavirus dominant in chickens (CdCoV). The distances between DdCoV and CdCoV are large enough to separate them into different species within the genus Gammacoronavirus. Our surveillance demonstrated that DdCoVs and CdCoVs belong to different lineages and occupy different ecological niches, further supporting that they should be classified into different species. Our surveillance also demonstrated that DdCoVs and CdCoVs are prevalent in live poultry markets in some regions of China. In conclusion, this study shed novel insight into the genetic diversity, evolution, distribution, and taxonomy of the coronaviruses circulating in chickens and ducks.

Indexed as

Genome, ViralGenomicsAnimalsChickensChinaConserved SequenceCoronavirusCoronavirus InfectionsDucksGene OrderPhylogenyPoultry DiseasesPublic Health SurveillanceRecombination, GeneticTandem Repeat Sequences

Identifiers

PMID26053682
PMCPMC4459809
OpenAlexW586798397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.