Evidence map›Paper›PMID 26053667›Full record

ArticleScientific reports2015

Mutational Analysis of Intracellular Loops Identify Cross Talk with Nucleotide Binding Domains of Yeast ABC Transporter Cdr1p.

Abdul Haseeb Shah, Manpreet Kaur Rawal, Sanjiveeni Dhamgaye, Sneha Sudha Komath, Ajay Kumar Saxena, Rajendra Prasad

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Clorgyline Analogs Synergize with Azoles against Drug Efflux inJournal of fungi (Basel, Switzerland) · 2023
    Article
  6. Review
  7. FK506 Resistance ofAntimicrobial agents and chemotherapy · 2019
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Abdul Haseeb ShahSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Manpreet Kaur RawalSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Sanjiveeni DhamgayeSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Sneha Sudha KomathSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Ajay Kumar SaxenaSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Rajendra PrasadSchool of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Jawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ABC transporter Cdr1 protein (Cdr1p) of Candida albicans, which plays a major role in antifungal resistance, has two transmembrane domains (TMDs) and two nucleotide binding domains (NBDs) that are interconnected by extracellular (ECLs) and intracellular (ICLs) loops. To examine the communication interface between the NBDs and ICLs of Cdr1p, we subjected all four ICLs to alanine scanning mutagenesis, replacing each of the 85 residues with an alanine. The resulting ICL mutant library was analyzed by biochemical and phenotypic mapping. Only 18% of the mutants from this library displayed enhanced drug susceptibility. Most of the drug-susceptible mutants displayed uncoupling between ATP hydrolysis and drug transport. The two drug-susceptible ICL1 mutants (I574A and S593A) that lay within or close to the predicted coupling helix yielded two chromosomal suppressor mutations that fall near the Q-loop of NBD2 (R935) and in the Walker A motif (G190) of NBD1. Based on a 3D homology model and kinetic analysis of drug transport, our data suggest that large distances between ICL residues and their respective chromosomal suppressor mutations rule out a direct interaction between them. However, they impact the transport cycle by restoring the coupling interface via indirect downstream signaling.

Indexed as

Amino Acid SubstitutionAntifungal AgentsATP-Binding Cassette TransportersAzolesBiological TransportCandida albicansDNA-Binding ProteinsDNA Mutational AnalysisDrug Resistance, FungalFungal ProteinsMembrane Transport ProteinsMicrobial Sensitivity TestsProtein Structure, TertiaryAntifungal AgentsATP-Binding Cassette TransportersAzolesCDR1 protein, Candida albicansDNA-Binding ProteinsFungal ProteinsMembrane Transport Proteins

Identifiers

PMID26053667
PMCPMC4459223
OpenAlexW615984982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.