Evidence map›Paper›PMID 26053414›Full record

ArticleMolecular ecology2015

Comparative analyses of clinical and environmental populations of Cryptococcus neoformans in Botswana.

Yuan Chen, Anastasia P Litvintseva, Aubrey E Frazzitta, Miriam R Haverkamp, Liuyang Wang, Charles Fang, Charles Muthoga, Thomas G Mitchell, John R Perfect

Open access · hybridAbstract read
In one paragraph

Article in Molecular ecology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Biogenesis, germination, and pathogenesis ofMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Aspergillus flavus genetic structure at a turkey farm.Veterinary medicine and science · 2023
    Article
  9. Article
  10. Article
  11. Journal of fungi (Basel, Switzerland) · 2022
    Article
  12. Review
  13. The Predominance of a Specific Genotype ofComputational and mathematical methods in medicine · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Cryptococcus neoformans: Sex, morphogenesis, and virulence.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yuan ChenDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, 163 Hanes House, Trent Drive, Durham, NC, 27710, USA.
Anastasia P LitvintsevaDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, RM 214 Jones Building, Research Drive, Durham, NC, 27710, USA.
Aubrey E FrazzittaDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, 163 Hanes House, Trent Drive, Durham, NC, 27710, USA.
Miriam R HaverkampPerelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
Liuyang WangDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, 163 Hanes House, Trent Drive, Durham, NC, 27710, USA.
Charles FangDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, 163 Hanes House, Trent Drive, Durham, NC, 27710, USA.
Charles MuthogaBotswana-UPenn Partnership, National Health Laboratory, PO Box AC 157 ACH, Plot 5353 Extension 10 Church Road, Gaborone, Botswana.
Thomas G MitchellDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, RM 214 Jones Building, Research Drive, Durham, NC, 27710, USA.
John R PerfectDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, 163 Hanes House, Trent Drive, Durham, NC, 27710, USA.
Duke University Hospital · USDuke Medical Center · USDuke University · USUniversity of Pennsylvania · US

Funding

HIV and Other Infectious Consequences of Substance UseT32DA013911 · NIDA · MIRIAM HOSPITAL · PI TRACI C GREEN, JOSIAH D RICH · 2001 to 2026
$9.6M
Pathobiology of C. neoformans in the Central Nervous SystemR01AI073896 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2008 to 2018
$4.4M
Evolution of Cryptococcus neoformans Strains from Patients with HIV/AIDSR01AI093257 · NIAID · DUKE UNIVERSITY · PI PERFECT, JOHN R. · 2011 to 2022
$3.8M
STUDIES OF CRYPTOCOCCUS NEOFORMANTS ASSOCIATED WITH AIDSR01AI025783 · NIAID · DUKE UNIVERSITY · PI MITCHELL, THOMAS G. · 1987 to 2010
$2.1M
Clinical Research Training in Infectious DiseasesT32AI055412 · NIAID · TUFTS MEDICAL CENTER · PI SNYDMAN, DAVID RICHARD · 2005 to 2014
$1.3M
NIAID NIH HHS AI0055412-04NIAID NIH HHS AI25783NIAID NIH HHS AI73896NIAID NIH HHS AI93257NIAID NIH HHS R01 AI025783NIAID NIH HHS R01 AI073896NIAID NIH HHS R01 AI093257NIAID NIH HHS T32 AI055412NIDA NIH HHS T32 DA013911NIDA NIH HHS T32DA13911-10
6 · The paper itself

Abstract

Cryptococcus neoformans var. grubii (Cng) is the most common cause of fungal meningitis, and its prevalence is highest in sub-Saharan Africa. Patients become infected by inhaling airborne spores or desiccated yeast cells from the environment, where the fungus thrives in avian droppings, trees and soil. To investigate the prevalence and population structure of Cng in southern Africa, we analysed isolates from 77 environmental samples and 64 patients. We detected significant genetic diversity among isolates and strong evidence of geographic structure at the local level. High proportions of isolates with the rare MATa allele were observed in both clinical and environmental isolates; however, the mating-type alleles were unevenly distributed among different subpopulations. Nearly equal proportions of the MATa and MATα mating types were observed among all clinical isolates and in one environmental subpopulation from the eastern part of Botswana. As previously reported, there was evidence of both clonality and recombination in different geographic areas. These results provide a foundation for subsequent genomewide association studies to identify genes and genotypes linked to pathogenicity in humans.

Indexed as

Genes, Mating Type, FungalGenetics, PopulationAllelesBotswanaCryptococcosisCryptococcus neoformansDNA, FungalEnvironmentGenetic VariationGeographyHumansMolecular Sequence DataMultilocus Sequence TypingSequence Analysis, DNATreesDNA, FungalCryptococcus neoformansgenotypingpopulation structurerecombination

Identifiers

PMID26053414
PMCPMC4758399
OpenAlexW2109640668

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.