Evidence map›Paper›PMID 26052893›Full record

ArticleNature structural & molecular biology2015

ATP binding drives substrate capture in an ECF transporter by a release-and-catch mechanism.

Nathan K Karpowich, Jin Mei Song, Nicolette Cocco, Da-Neng Wang

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Flavin transferase ApbE: From discovery to applications.The Journal of biological chemistry · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. RibU is an essential determinant ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Characterization of the Streptococcus mutansJournal of bacteriology · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Functional Prediction and Assignment ofFrontiers in genetics · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nathan K KarpowichSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, New York, USA.
Jin Mei SongSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, New York, USA.
Nicolette CoccoSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, New York, USA.
Da-Neng WangSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, New York, USA.
New York University · US

Funding

STRUCTURAL STUDIES OF SUGAR TRANSPORTERSR01DK053973 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 1998 to 2014
$3.6M
Dopamine Transporters: Mechanisms of Ligand InteractionR01DA019676 · NIDA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REITH, MAARTEN E · 2006 to 2016
$2.9M
Structural and Mechanistic Characterization of Neurotransmitter Reuptake InhibitiR01MH083840 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2008 to 2012
$2.2M
Training program in Molecular BiophysicsT32GM088118 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STOKES, DAVID L. · 2010 to 2019
$1.8M
Structural and mechanistic studies of INDY proteinsR01DK099023 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2013 to 2016
$1.5M
Structural Basis of Tetracycline Resistance by Efflux Pump TetL.R01GM093825 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2010 to 2014
$1.4M
Intra-renal Bold MRI: Application to Diabetic NephropathyR01DK073973 · NIDDK · NORTHSHORE UNIVERSITY HEALTHSYSTEM · PI PRASAD, POTTUMARTHI V · 2007 to 2009
$677k
Structural Biology of the Sodium-Calcium ExchangerF32HL091618 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KARPOWICH, NATHAN KYLE · 2008 to 2010
$155k
NHLBI NIH HHS F32 HL091618NHLBI NIH HHS F32-HL091618NIDDK NIH HHS R01 DK053973NIDDK NIH HHS R01 DK073973NIDDK NIH HHS R01-DK073973NIDDK NIH HHS R01 DK099023NIDDK NIH HHS R01DK099023NIGMS NIH HHS R01 GM093825NIGMS NIH HHS R01-GM093825NIMH NIH HHS R01 MH083840NIMH NIH HHS R01- MH083840
6 · The paper itself

Abstract

ECF transporters are a family of active transporters for vitamins. They are composed of four subunits: a membrane-embedded substrate-binding subunit (EcfS), a transmembrane coupling subunit (EcfT) and two ATP-binding-cassette ATPases (EcfA and EcfA'). We have investigated the mechanism of the ECF transporter for riboflavin from the pathogen Listeria monocytogenes, LmECF-RibU. Using structural and biochemical approaches, we found that ATP binding to the EcfAA' ATPases drives a conformational change that dissociates the S subunit from the EcfAA'T ECF module. Upon release from the ECF module, the RibU S subunit then binds the riboflavin transport substrate. We also find that S subunits for distinct substrates compete for the ATP-bound state of the ECF module. Our results explain how ECF transporters capture the transport substrate and reproduce the in vivo observations on S-subunit competition for which the family was named.

Indexed as

Adenosine TriphosphateBacterial ProteinsCrystallography, X-RayHumansListeria monocytogenesListeriosisMembrane Transport ProteinsModels, MolecularProtein ConformationProtein MultimerizationProtein SubunitsRiboflavinAdenosine TriphosphateBacterial ProteinsMembrane Transport ProteinsProtein SubunitsRiboflavin

Identifiers

PMID26052893
PMCPMC4634891
OpenAlexW1500560149

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.