Evidence map›Paper›PMID 26052331›Full record

ArticleFrontiers in plant science2015

Sequence and expression analysis of the AMT gene family in poplar.

Xiangyu Wu, Han Yang, Chunpu Qu, Zhiru Xu, Wei Li, Bingqing Hao, Chuanping Yang, Guangyu Sun, Guanjun Liu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
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  9. Structure and Expression Analysis ofInternational journal of molecular sciences · 2023
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  17. Genome-wide analysis of3 Biotech · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiangyu WuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China ; Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University Beijing, China.
Han YangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Chunpu QuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Zhiru XuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China ; School of Life Science, Northeast Forestry University Harbin, China.
Wei LiState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Bingqing HaoState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Chuanping YangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Guangyu SunSchool of Life Science, Northeast Forestry University Harbin, China.
Guanjun LiuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University Harbin, China.
Northeast Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ammonium transporters (AMTs) are plasma membrane proteins that exclusively transport ammonium/ammonia. These proteins are encoded by an ancient gene family with many members. The molecular characteristics and evolutionary history of AMTs in woody plants are still poorly understood. We comprehensively evaluated the AMT gene family in the latest release of the Populus trichocarpa genome (version 3.0; Phytozome 9.0), and identified 16 AMT genes. These genes formed four clusters; AMT1 (7 genes), AMT2 (2 genes), AMT3 (2 genes), and AMT4 (5 genes). Evolutionary analyses suggested that the Populus AMT gene family has expanded via whole-genome duplication events. Among the 16 AMT genes, 15 genes are located on 11 chromosomes of Populus. Expression analyses showed that 14 AMT genes were vegetative organs expressed; AMT1;1/1;3/1;6/3;2 and AMT1;1/1;2/2;2/3;1 had high transcript accumulation level in the leaves and roots, respectively and strongly changes under the nitrogen-dependent experiments. The results imply the functional roles of AMT genes in ammonium absorption in poplar.

Indexed as

ammonium deficiencyammonium transporterevolutionary mechanismexpression profilegenome-wide analysispoplar

Identifiers

PMID26052331
PMCPMC4440354
OpenAlexW1562691154

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.