Evidence map›Paper›PMID 26051671›Full record

ArticleApplied microbiology and biotechnology2015

PEP3 overexpression shortens lag phase but does not alter growth rate in Saccharomyces cerevisiae exposed to acetic acid stress.

Jun Ding, Garrett Holzwarth, C Samuel Bradford, Ben Cooley, Allen S Yoshinaga, Jana Patton-Vogt, Hagai Abeliovich, Michael H Penner, Alan T Bakalinsky

Open access · greenAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Microbial response to acid stress: mechanisms and applications.Applied microbiology and biotechnology · 2020
    Review
  8. Adaptive Response and Tolerance to Acetic Acid inFrontiers in microbiology · 2018
    Review
  9. Omics analysis of acetic acid tolerance in Saccharomyces cerevisiae.World journal of microbiology & biotechnology · 2017
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jun DingDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, USA.
Garrett HolzwarthDepartment of Food Science and Technology, Oregon State University, Corvallis, OR, USA.
C Samuel BradfordDepartment of Environmental & Molecular Toxicology, Oregon State University, Corvallis, OR, USA.
Ben CooleyBiological Sciences, Duquesne University, Pittsburgh, PA, USA.
Allen S YoshinagaDepartment of Food Science and Technology, Oregon State University, Corvallis, OR, USA.
Jana Patton-VogtBiological Sciences, Duquesne University, Pittsburgh, PA, USA.
Hagai AbeliovichDepartment of Biochemistry and Food Science, Hebrew University, Rehovot, Israel.
Michael H PennerDepartment of Food Science and Technology, Oregon State University, Corvallis, OR, USA.
Alan T BakalinskyDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, USA. alan.bakalinsky@oregonstate.edu.
Oregon State University · USDuquesne University · USHebrew University of Jerusalem · IL

Funding

Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
The Role of Phospholipid Turnover in Membrane Protein FunctionR15GM104876 · NIGMS · DUQUESNE UNIVERSITY · PI VOGT, JANA L · 2013 to 2024
$1.3M
NIEHS NIH HHS P30 ES000210NIEHS NIH HHS P30ES000210-42NIGMS NIH HHS R15 GM104876NIGMS NIH HHS R15GM104876
6 · The paper itself

Abstract

In fungi, two recognized mechanisms contribute to pH homeostasis: the plasma membrane proton-pumping ATPase that exports excess protons and the vacuolar proton-pumping ATPase (V-ATPase) that mediates vacuolar proton uptake. Here, we report that overexpression of PEP3 which encodes a component of the HOPS and CORVET complexes involved in vacuolar biogenesis, shortened lag phase in Saccharomyces cerevisiae exposed to acetic acid stress. By confocal microscopy, PEP3-overexpressing cells stained with the vacuolar membrane-specific dye, FM4-64 had more fragmented vacuoles than the wild-type control. The stained overexpression mutant was also found to exhibit about 3.6-fold more FM4-64 fluorescence than the wild-type control as determined by flow cytometry. While the vacuolar pH of the wild-type strain grown in the presence of 80 mM acetic acid was significantly higher than in the absence of added acid, no significant difference was observed in vacuolar pH of the overexpression strain grown either in the presence or absence of 80 mM acetic acid. Based on an indirect growth assay, the PEP3-overexpression strain exhibited higher V-ATPase activity. We hypothesize that PEP3 overexpression provides protection from acid stress by increasing vacuolar surface area and V-ATPase activity and, hence, proton-sequestering capacity.

Indexed as

Gene ExpressionStress, PhysiologicalAcetic AcidAdaptor Proteins, Vesicular TransportHydrogen-Ion ConcentrationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesVacuolesAcetic AcidAdaptor Proteins, Vesicular TransportPEP3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVacuolar Proton-Translocating ATPasesAcetic acidCORVETHOPSPEP3PEP5Saccharomyces cerevisiaeSTM1VacuoleV-ATPaseYeast

Identifiers

PMID26051671
PMCPMC5497686
OpenAlexW567815657

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.