Evidence map›Paper›PMID 26049074›Full record

ArticleMatrix biology : journal of the International Society for Matrix Biology2015

Preferential sites for intramolecular glucosepane cross-link formation in type I collagen: A thermodynamic study.

Thomas A Collier, Anthony Nash, Helen L Birch, Nora H de Leeuw

Open access · hybridAbstract read
In one paragraph

Article in Matrix biology : journal of the International Society for Matrix Biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Advanced-Glycation Endproducts: How cross-linking properties affect the collagen fibril behavior.Journal of the mechanical behavior of biomedical materials · 2023
    Article
  5. Review
  6. Article
  7. Contrasting Local and Macroscopic Effects of Collagen Hydroxylation.International journal of molecular sciences · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Thomas A CollierDepartment of Chemistry, University College London, 20 Gordon Street, London, WC1H 0AJ, United Kingdom. Electronic address: t.collier.12@ucl.ac.uk.
Anthony NashDepartment of Chemistry, University College London, 20 Gordon Street, London, WC1H 0AJ, United Kingdom.
Helen L BirchInstitute of Orthopaedics and Musculoskeletal Science, UCL, RNOH Stanmore Campus, London, United Kingdom.
Nora H de LeeuwDepartment of Chemistry, University College London, 20 Gordon Street, London, WC1H 0AJ, United Kingdom.
University College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K007785
6 · The paper itself

Abstract

The extracellular matrix (ECM) undergoes progressive age-related stiffening and loss of proteolytic digestibility due to an increase in concentration of advanced glycation end products (AGEs). The most abundant AGE, glucosepane, accumulates in collagen with concentrations over 100 times greater than all other AGEs. Detrimental collagen stiffening properties are believed to play a significant role in several age-related diseases such as osteoporosis and cardiovascular disease. Currently little is known of the potential location of covalently cross-linked glucosepane formation within collagen molecules; neither are there reports on how the respective cross-link sites affect the physical and biochemical properties of collagen. Using fully atomistic molecular dynamics simulations (MD) we have identified six sites where the formation of a covalent intra-molecular glucosepane cross-link within a single collagen molecule in a fibrillar environment is energetically favourable. Identification of these favourable sites enables us to align collagen cross-linking with experimentally observed changes to the ECM. For example, formation of glucosepane was found to be energetically favourable within close proximity of the Matrix Metalloproteinase-1 (MMP1) binding site, which could potentially disrupt collagen degradation.

Indexed as

AnimalsBinding SitesCollagen Type ICross-Linking ReagentsExtracellular MatrixGlycation End Products, AdvancedMatrix Metalloproteinase 1Molecular Dynamics SimulationProtein BindingRatsThermodynamicsCollagen Type ICross-Linking ReagentsglucosepaneGlycation End Products, AdvancedMatrix Metalloproteinase 1MMP1 protein, ratAdvanced glycation end productsCollagenGlucosepaneGlycationMolecular dynamicsProtein cross-linking

Identifiers

PMID26049074
PMCPMC4659457
OpenAlexW622873529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.