Evidence map›Paper›PMID 26048945›Full record

ArticleApplied and environmental microbiology2015

Physiology, Genomics, and Pathway Engineering of an Ethanol-Tolerant Strain of Clostridium phytofermentans.

Andrew C Tolonen, Trevor R Zuroff, Mohandass Ramya, Magali Boutard, Tristan Cerisy, Wayne R Curtis

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Frontiers in bioengineering and biotechnology · 2023
    Review
  2. Tuning of Gene Expression inACS synthetic biology · 2022
    Article
  3. Frontiers in microbiology · 2021
    Article
  4. Review
  5. Article
  6. Metabolic and evolutionary responses ofBiotechnology for biofuels · 2020
    Article
  7. Article
  8. Amino acid catabolism-directed biofuel production inBiotechnology reports (Amsterdam, Netherlands) · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Andrew C TolonenGenoscope-CEA, CNRS-UMR8030, Université d'Évry, Évry, France atolonen@genoscope.cns.fr.
Trevor R ZuroffDepartment of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania, USA.
Mohandass RamyaDepartment of Genetic Engineering, SRM University, Kattankulathur, India.
Magali BoutardGenoscope-CEA, CNRS-UMR8030, Université d'Évry, Évry, France.
Tristan CerisyGenoscope-CEA, CNRS-UMR8030, Université d'Évry, Évry, France.
Wayne R CurtisDepartment of Chemical Engineering, The Pennsylvania State University, University Park, Pennsylvania, USA.
Centre National de la Recherche Scientifique · FRPennsylvania State University · USGenoscope · FRSRM University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novel processing strategies for hydrolysis and fermentation of lignocellulosic biomass in a single reactor offer large potential cost savings for production of biocommodities and biofuels. One critical challenge is retaining high enzyme production in the presence of elevated product titers. Toward this goal, the cellulolytic, ethanol-producing bacterium Clostridium phytofermentans was adapted to increased ethanol concentrations. The resulting ethanol-tolerant (ET) strain has nearly doubled ethanol tolerance relative to the wild-type level but also reduced ethanol yield and growth at low ethanol concentrations. The genome of the ET strain has coding changes in proteins involved in membrane biosynthesis, the Rnf complex, cation homeostasis, gene regulation, and ethanol production. In particular, purification of the mutant bifunctional acetaldehyde coenzyme A (CoA)/alcohol dehydrogenase showed that a G609D variant abolished its activities, including ethanol formation. Heterologous expression of Zymomonas mobilis pyruvate decarboxylase and alcohol dehydrogenase in the ET strain increased cellulose consumption and restored ethanol production, demonstrating how metabolic engineering can be used to overcome disadvantageous mutations incurred during adaptation to ethanol. We discuss how genetic changes in the ET strain reveal novel potential strategies for improving microbial solvent tolerance.

Indexed as

Metabolic EngineeringAdaptation, BiologicalAlcohol DehydrogenaseCelluloseClostridiumDrug ToleranceEthanolGene ExpressionMetabolic Networks and PathwaysPyruvate DecarboxylaseRecombinant ProteinsZymomonasAlcohol DehydrogenaseCelluloseEthanolPyruvate DecarboxylaseRecombinant Proteins

Identifiers

PMID26048945
PMCPMC4510172
OpenAlexW1850990689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.