ArticleGenetics2015
Reconstruction of Genome Ancestry Blocks in Multiparental Populations.
Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
35 citing papers in PubMed.
- Article
- MAGIC populations: a next-generation framework for dissecting complex quantitative traits and accelerating molecular breeding in crops.Frontiers in plant science · 2026Review
- Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea.The plant genome · 2024Article
- Modeling QTL-by-environment interactions for multi-parent populations.Frontiers in plant science · 2024Article
- Using haplotype and QTL analysis to fix favorable alleles in diploid potato breeding.The plant genome · 2023Article
- GBScleanR: robust genotyping error correction using a hidden Markov model with error pattern recognition.Genetics · 2023Article
- Whole genome sequencing of ASD 16 and ADT 43 to identify predominant grain size and starch associated alleles in rice.Molecular biology reports · 2022Article
- statgenMPP: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations.Bioinformatics (Oxford, England) · 2022Article
- A generic hidden Markov model for multiparent populations.G3 (Bethesda, Md.) · 2022Article
- Article
- An IBD-based mixed model approach for QTL mapping in multiparental populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Crafting for a better MAGIC: systematic design and test for Multiparental Advanced Generation Inter-Cross population.G3 (Bethesda, Md.) · 2021Article
- Article
- SPEARS: Standard Performance Evaluation of Ancestral haplotype Reconstruction through Simulation.Bioinformatics (Oxford, England) · 2021Article
- Accurate, ultra-low coverage genome reconstruction and association studies in Hybrid Swarm mapping populations.G3 (Bethesda, Md.) · 2021Article
- Lessons from a GWAS study of a wheat pre-breeding program: pyramiding resistance alleles to Fusarium crown rot.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Gene-level quantitative trait mapping in Caenorhabditis elegans.G3 (Bethesda, Md.) · 2021Article
- Ancestral haplotype reconstruction in endogamous populations using identity-by-descent.PLoS computational biology · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present a general hidden Markov model framework called R: econstructing A: ncestry B: locks BIT: by bit (RABBIT) for reconstructing genome ancestry blocks from single-nucleotide polymorphism (SNP) array data, a required step for quantitative trait locus (QTL) mapping. The framework can be applied to a wide range of mapping populations such as the Arabidopsis multiparent advanced generation intercross (MAGIC), the mouse Collaborative Cross (CC), and the diversity outcross (DO) for both autosomes and X chromosomes if they exist. The model underlying RABBIT accounts for the joint pattern of recombination breakpoints between two homologous chromosomes and missing data and allelic typing errors in the genotype data of both sampled individuals and founders. Studies on simulated data of the MAGIC and the CC and real data of the MAGIC, the DO, and the CC demonstrate that RABBIT is more robust and accurate in reconstructing recombination bin maps than some commonly used methods.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.