Evidence map›Paper›PMID 26047035›Full record

ArticleScientific reports2015

The Evolutionary History of R2R3-MYB Proteins Across 50 Eukaryotes: New Insights Into Subfamily Classification and Expansion.

Hai Du, Zhe Liang, Sen Zhao, Ming-Ge Nan, Lam-Son Phan Tran, Kun Lu, Yu-Bi Huang, Jia-Na Li

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 184 citations in OpenAlex.

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  19. Pan-genome analysis of the R2R3-MYB genes family inFrontiers in plant science · 2025
    Article
  20. Genome Sequencing and Metabolic Potential Analysis ofJournal of fungi (Basel, Switzerland) · 2024
    Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Hai DuCollege of Agronomy and Biotechnology, Southwest University, Chongqing, 400716, China.
Zhe LiangDepartment of Biological Sciences, National University of Singapore, 117543, Singapore.
Sen Zhao1] Department of Cancer Prevention, Institute for Cancer Research, Norwegian Radium Hospital-Oslo University Hospital, Oslo, Norway [2] Centre for Cancer Biomedicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Ming-Ge NanCollege of Agronomy and Biotechnology, Southwest University, Chongqing, 400716, China.
Lam-Son Phan TranSignaling Pathway Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045 Japan.
Kun LuCollege of Agronomy and Biotechnology, Southwest University, Chongqing, 400716, China.
Yu-Bi HuangKey Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Maize Research Institute of Sichuan Agricultural University, Ministry of Agriculture, Chengdu Sichuan, China.
Jia-Na LiCollege of Agronomy and Biotechnology, Southwest University, Chongqing, 400716, China.
Southwest University · CNNational University of Singapore · SGOslo University Hospital · NORIKEN Center for Sustainable Resource Science · JPSichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

R2R3-MYB proteins (2R-MYBs) are one of the main transcription factor families in higher plants. Since the evolutionary history of this gene family across the eukaryotic kingdom remains unknown, we performed a comparative analysis of 2R-MYBs from 50 major eukaryotic lineages, with particular emphasis on land plants. A total of 1548 candidates were identified among diverse taxonomic groups, which allowed for an updated classification of 73 highly conserved subfamilies, including many newly identified subfamilies. Our results revealed that the protein architectures, intron patterns, and sequence characteristics were remarkably conserved in each subfamily. At least four subfamilies were derived from early land plants, 10 evolved from spermatophytes, and 19 from angiosperms, demonstrating the diversity and preferential expansion of this gene family in land plants. Moreover, we determined that their remarkable expansion was mainly attributed to whole genome and segmental duplication, where duplicates were preferentially retained within certain subfamilies that shared three homologous intron patterns (a, b, and c) even though up to 12 types of patterns existed. Through our integrated distributions, sequence characteristics, and phylogenetic tree analyses, we confirm that 2R-MYBs are old and postulate that 3R-MYBs may be evolutionarily derived from 2R-MYBs via intragenic domain duplication.

Indexed as

Amino Acid SequenceDatabases, FactualEukaryotaEvolution, MolecularIntronsMolecular Sequence DataMultigene FamilyPhylogenySequence AlignmentSequence Homology, Amino AcidTranscription FactorsTranscription Factors

Identifiers

PMID26047035
PMCPMC4603784
OpenAlexW2271814590

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.