Evidence map›Paper›PMID 26046669›Full record

ArticleScientific reports2015

Multi-dimensional TOF-SIMS analysis for effective profiling of disease-related ions from the tissue surface.

Ji-Won Park, Hyobin Jeong, Byeongsoo Kang, Su Jin Kim, Sang Yoon Park, Sokbom Kang, Hark Kyun Kim, Joon Sig Choi, Daehee Hwang, Tae Geol Lee

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Ji-Won Park1] Center for Nano-Bio Measurement, Korea Research Institute of Standards and Science, Daejeon, Republic of Korea [2] Department of Nano and Bio Surface Science, University of Science and Technology, Daejeon, Republic of Korea [3] Center for Systems Biology of Plant Senescence and Life History, Institute for Basic Science, Daegu, Republic of Korea.
Hyobin JeongSchool of interdisciplinary bioscience and bioengineering, POSTECH, Pohang, Republic of Korea.
Byeongsoo KangDepartment of New Biology, DGIST, Daegu, Republic of Korea.
Su Jin Kim1] Center for Nano-Bio Measurement, Korea Research Institute of Standards and Science, Daejeon, Republic of Korea [2] Department of Biochemistry, Chungnam National University, Daejeon, Republic of Korea.
Sang Yoon ParkNational Cancer Center, Goyang, Republic of Korea.
Sokbom KangNational Cancer Center, Goyang, Republic of Korea.
Hark Kyun KimNational Cancer Center, Goyang, Republic of Korea.
Joon Sig ChoiDepartment of Biochemistry, Chungnam National University, Daejeon, Republic of Korea.
Daehee Hwang1] School of interdisciplinary bioscience and bioengineering, POSTECH, Pohang, Republic of Korea [2] Department of New Biology, DGIST, Daegu, Republic of Korea [3] Center for Systems Biology of Plant Senescence and Life History, Institute for Basic Science, Daegu, Republic of Korea.
Tae Geol Lee1] Center for Nano-Bio Measurement, Korea Research Institute of Standards and Science, Daejeon, Republic of Korea [2] Department of Nano and Bio Surface Science, University of Science and Technology, Daejeon, Republic of Korea.
National Cancer Center · KRChungnam National University · KRInstitute for Basic Science · KRDaegu Gyeongbuk Institute of Science and Technology · KRKorea Research Institute of Standards and Science · KRPohang University of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) emerges as a promising tool to identify the ions (small molecules) indicative of disease states from the surface of patient tissues. In TOF-SIMS analysis, an enhanced ionization of surface molecules is critical to increase the number of detected ions. Several methods have been developed to enhance ionization capability. However, how these methods improve identification of disease-related ions has not been systematically explored. Here, we present a multi-dimensional SIMS (MD-SIMS) that combines conventional TOF-SIMS and metal-assisted SIMS (MetA-SIMS). Using this approach, we analyzed cancer and adjacent normal tissues first by TOF-SIMS and subsequently by MetA-SIMS. In total, TOF- and MetA-SIMS detected 632 and 959 ions, respectively. Among them, 426 were commonly detected by both methods, while 206 and 533 were detected uniquely by TOF- and MetA-SIMS, respectively. Of the 426 commonly detected ions, 250 increased in their intensities by MetA-SIMS, whereas 176 decreased. The integrated analysis of the ions detected by the two methods resulted in an increased number of discriminatory ions leading to an enhanced separation between cancer and normal tissues. Therefore, the results show that MD-SIMS can be a useful approach to provide a comprehensive list of discriminatory ions indicative of disease states.

Indexed as

Spectrometry, Mass, Secondary IonDiscriminant AnalysisFemaleHumansIonsLeast-Squares AnalysisMetalsOvarian NeoplasmsOvaryPrincipal Component AnalysisIonsMetals

Identifiers

PMID26046669
PMCPMC4457153
OpenAlexW2262568516

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.