ArticlePloS one2015
The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.
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105 citing papers in PubMed, 183 citations in OpenAlex.
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- Comprehensive analysis of complete Chloroplast genome sequence of Cardiospermum halicacabum L. (Sapindaceae).Scientific reports · 2025Article
- Comparative Analysis of the Complete Chloroplast Genomes of EightCurrent issues in molecular biology · 2025Article
- Comparative Chloroplast Genomics ofInternational journal of molecular sciences · 2025Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2025Article
- Chloroplast genomic characterization and phylogenetic analysis of elevenFrontiers in plant science · 2025Article
- Complete chloroplast genome sequence and phylogenetic analysis of Symphytum officinale.Genetics and molecular biology · 2025Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
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- Comparative genomics and phylogenetic analysis of six Malvaceae species based on chloroplast genomes.BMC plant biology · 2024Article
- Comparative analysis of the complete chloroplast genome of Pueraria provides insights for species identification, phylogenetic relationships, and taxonomy.BMC plant biology · 2024Article
- New insights on the phylogeny, evolutionary history, and ecological adaptation mechanism in cycle-cup oaks based on chloroplast genomes.Ecology and evolution · 2024Article
45 more citing papers are in PubMed but not listed here.
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6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Actinidia chinensis is an important economic plant belonging to the basal lineage of the asterids. Availability of a complete Actinidia chloroplast genome sequence is crucial to understanding phylogenetic relationships among major lineages of angiosperms and facilitates kiwifruit genetic improvement. We report here the complete nucleotide sequences of the chloroplast genomes for Actinidia chinensis and A. chinensis var deliciosa obtained through de novo assembly of Illumina paired-end reads produced by total DNA sequencing. The total genome size ranges from 155,446 to 157,557 bp, with an inverted repeat (IR) of 24,013 to 24,391 bp, a large single copy region (LSC) of 87,984 to 88,337 bp and a small single copy region (SSC) of 20,332 to 20,336 bp. The genome encodes 113 different genes, including 79 unique protein-coding genes, 30 tRNA genes and 4 ribosomal RNA genes, with 16 duplicated in the inverted repeats, and a tRNA gene (trnfM-CAU) duplicated once in the LSC region. Comparisons of IR boundaries among four asterid species showed that IR/LSC borders were extended into the 5' portion of the psbA gene and IR contraction occurred in Actinidia. The clap gene has been lost from the chloroplast genome in Actinidia, and may have been transferred to the nucleus during chloroplast evolution. Twenty-seven polymorphic simple sequence repeat (SSR) loci were identified in the Actinidia chloroplast genome. Maximum parsimony analyses of a 72-gene, 16 taxa angiosperm dataset strongly support the placement of Actinidiaceae in Ericales within the basal asterids.
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