Evidence map›Paper›PMID 26046598›Full record

ArticleJournal of biological dynamics2015

Information content in data sets for a nucleated-polymerization model.

H T Banks, Marie Doumic, Carola Kruse, Stephanie Prigent, Human Rezaei

Abstract read
In one paragraph

Article in Journal of biological dynamics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

H T Banksa Center for Research in Scientific Computation , North Carolina State University , Raleigh , NC 27695-8212 , USA.
Marie Doumic
Carola Kruse
Stephanie Prigent
Human Rezaei

Funding

Mathematical and Statistical Modeling to Inform Design of HIV Clinical TrialsR01AI071915 · NIAID · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BANKS, H. THOMAS · 2006 to 2012
$4.6M
NIAID NIH HHS R01 AI071915NIAID NIH HHS R01AI071915-10
6 · The paper itself

Abstract

We illustrate the use of statistical tools (asymptotic theories of standard error quantification using appropriate statistical models, bootstrapping, and model comparison techniques) in addition to sensitivity analysis that may be employed to determine the information content in data sets. We do this in the context of recent models [S. Prigent, A. Ballesta, F. Charles, N. Lenuzza, P. Gabriel, L.M. Tine, H. Rezaei, and M. Doumic, An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation, PLoS ONE 7 (2012), e43273. doi:10.1371/journal.pone.0043273.] for nucleated polymerization in proteins, about which very little is known regarding the underlying mechanisms; thus, the methodology we develop here may be of great help to experimentalists. We conclude that the investigated data sets will support with reasonable levels of uncertainty only the estimation of the parameters related to the early steps of the aggregation process.

Indexed as

AlgorithmsAmyloidKineticsModels, BiologicalModels, StatisticalPeptidesPolymerizationSensitivity and SpecificityAmyloidPeptidespolyglutamine49Q1262P1064B1065M32information contentinverse problemspolyglutamine and aggregation modellingsensitivityuncertainty quantification

Identifiers

PMID26046598
PMCPMC4493483

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.