Evidence map›Paper›PMID 26045719›Full record

ArticleMobile DNA2015

Repbase Update, a database of repetitive elements in eukaryotic genomes.

Weidong Bao, Kenji K Kojima, Oleksiy Kohany

Open access · goldAbstract read
In one paragraph

Article in Mobile DNA, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2,001 papers.

0numbers the graph read from it
0cells of the map it votes in
2,001citing papers in PubMed
59.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2,001 citing papers in PubMed, 3,338 citations in OpenAlex.

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  19. Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  20. Article

1,941 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Weidong BaoGenetic Information Research Institute, 5150 El Camino Real, Ste B-30, Los Altos, CA 94022 USA.
Kenji K KojimaGenetic Information Research Institute, 5150 El Camino Real, Ste B-30, Los Altos, CA 94022 USA ; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato-ku, Tokyo Japan ; Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai Minato-ku, Tokyo, 108-8639 Japan.
Oleksiy KohanyGenetic Information Research Institute, 5150 El Camino Real, Ste B-30, Los Altos, CA 94022 USA.
Genetic Information Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Repbase Update (RU) is a database of representative repeat sequences in eukaryotic genomes. Since its first development as a database of human repetitive sequences in 1992, RU has been serving as a well-curated reference database fundamental for almost all eukaryotic genome sequence analyses. Here, we introduce recent updates of RU, focusing on technical issues concerning the submission and updating of Repbase entries and will give short examples of using RU data. RU sincerely invites a broader submission of repeat sequences from the research community.

Indexed as

DatabaseRepbase ReportsRepbaseSubmitterRepbase UpdateTransposable element

Identifiers

PMID26045719
PMCPMC4455052
OpenAlexW1482190741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.