Evidence map›Paper›PMID 26045439›Full record

ArticleScience (New York, N.Y.)2015

Viral immunology. Comprehensive serological profiling of human populations using a synthetic human virome.

George J Xu, Tomasz Kula, Qikai Xu, Mamie Z Li, Suzanne D Vernon, Thumbi Ndung'u, Kiat Ruxrungtham, Jorge Sanchez, Christian Brander, Raymond T Chung and 4 more

Registry-linked trialOpen access · greenAbstract readEvaluation Study
In one paragraph

Article in Science (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04397900 (A Blood Collection Study From Volunteers Who Have Recovered From COVID-19 Infection to Identify Immunogenic Viral Epitopes in SARS-CoV-2), which is not on this map. Cited by 315 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
315citing papers in PubMed, 2 pooled it
22.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04397900 completednot on this mapstarted 2020, after this paper: background citation

A Blood Collection Study From Volunteers Who Have Recovered From COVID-19 Infection to Identify Immunogenic Viral Epitopes in SARS-CoV-2

TypeobservationalSponsorTScan Therapeutics, Inc.Ran2020 to 2021Enrolled80ConditionsIdentify the Viral Epitopes of Memory CD8 T Cells From Individuals That Have Recovered From SARS-CoV-2 Infection, Determine Which SARS-CoV-2 Proteins Are Frequently Recognized by T Cells in Patients With Varying HLA Types
3 · Its place in the literature

Who cites it

315 citing papers in PubMed, 2 syntheses or guidelines pooled it, 493 citations in OpenAlex.

  1. Pooled it
  2. Monogenic etiologies of persistent human papillomavirus infections: A comprehensive systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Pooled it
  3. Trial
  4. Systemic Immune Correlates of Long-term Survival after Delta-24-RGD Based on the Therapeutic Adenovirus for Recurrent Glioblastoma Effect Trial (TARGET).Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Trial
  5. Trial
  6. Trial
  7. Trial
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

255 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 6 countries.

George J XuProgram in Biophysics, Harvard University, Cambridge, MA 02115, USA. Harvard-Massachusetts Institute of Technology (MIT) Division of Health Sciences and Technology, Cambridge, MA 02139, USA. Division of Genetics, Department of Medicine, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Department of Genetics, Harvard University Medical School, Boston, MA 02115, USA.
Tomasz KulaDivision of Genetics, Department of Medicine, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Department of Genetics, Harvard University Medical School, Boston, MA 02115, USA. Program in Biological and Biomedical Sciences, Harvard University, Cambridge, MA 02115, USA.
Qikai XuDivision of Genetics, Department of Medicine, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Department of Genetics, Harvard University Medical School, Boston, MA 02115, USA.
Mamie Z LiDivision of Genetics, Department of Medicine, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Department of Genetics, Harvard University Medical School, Boston, MA 02115, USA.
Suzanne D VernonSolve ME/CFS Initiative, Los Angeles, CA 90036, USA.
Thumbi Ndung'uKwaZulu-Natal Research Institute for Tuberculosis and HIV, Nelson R. Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa. HIV Pathogenesis Programme, Doris Duke Medical Research Institute, Nelson R. Mandela School of Medicine, Durban, South Africa. Ragon Institute of Massachusetts General Hospital, MIT, and Harvard University, Cambridge, MA 02139, USA. Max Planck Institute for Infection Biology, Chariteplatz, D-10117 Berlin, Germany.
Kiat RuxrungthamVaccine and Cellular Immunology Laboratory, Department of Medicine, Faculty of Medicine; and Chula-Vaccine Research Center, Chulalongkorn University, Bangkok, Thailand.
Jorge SanchezAsociación Civil IMPACTA Salud y Educación, Lima, Peru.
Christian BranderAIDS Research Institute-IrsiCaixa and AIDS Unit, Hospital Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
Raymond T ChungDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA 02114, USA.
Kevin C O'ConnorDepartment of Neurology, Yale School of Medicine, New Haven, CT 06520, USA.
Bruce WalkerHIV Pathogenesis Programme, Doris Duke Medical Research Institute, Nelson R. Mandela School of Medicine, Durban, South Africa. Ragon Institute of Massachusetts General Hospital, MIT, and Harvard University, Cambridge, MA 02139, USA.
H Benjamin LarmanDivision of Immunology, Department of Pathology, Johns Hopkins University, Baltimore, MD 21205, USA.
Stephen J ElledgeDivision of Genetics, Department of Medicine, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, MA 02115, USA. Department of Genetics, Harvard University Medical School, Boston, MA 02115, USA. Solve ME/CFS Initiative, Los Angeles, CA 90036, USA. selledge@genetics.med.harvard.edu.
Brigham and Women's Hospital · USRagon Institute of MGH, MIT and Harvard · USAsociación Civil Impacta Salud y Educación · PEChulalongkorn University · THInstitució Catalana de Recerca i Estudis Avançats · ESJohns Hopkins University · USMassachusetts General Hospital · USSolve ME/CFS Initiative · USYale University · US

Funding

Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI GEORG Michael LAUER · 2009 to 2026
$48.1M
Pathogenesis of Clade C HIV InfectionR37AI067073 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI WALKER, BRUCE D · 2011 to 2020
$6.6M
Discovery and Assessment of Genetic Determinants of HCV and HIV ControlR01DA033541 · NIDA · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, KIM, ARTHUR Y · 2011 to 2015
$3.4M
Consequences of acute HIV infection on the EBV-specific immunityR01DE018925 · NIDCR · MASSACHUSETTS GENERAL HOSPITAL · PI BRANDER, CHRISTIAN · 2007 to 2011
$1.3M
HLA TYPING AND EPITOPE MAPPING RELATIVE TO HIV VACCINE DESIGN-266030024N01AI030024 · NIAID · THE MASSACHUSETTS GENERAL HOSP · 2003 to 2005
–
Howard Hughes Medical InstituteNIAID NIH HHS AI082630NIAID NIH HHS N01 AI030024NIAID NIH HHS R37 AI067073NIAID NIH HHS R37AI067073NIAID NIH HHS U19 AI082630NIDA NIH HHS DA033541NIDA NIH HHS R01 DA033541NIDCR NIH HHS R01 DE018925NIDCR NIH HHS R01 DE018925-04PHS HHS N01-A1-30024PHS HHS N01-AL-15422
6 · The paper itself

Abstract

The human virome plays important roles in health and immunity. However, current methods for detecting viral infections and antiviral responses have limited throughput and coverage. Here, we present VirScan, a high-throughput method to comprehensively analyze antiviral antibodies using immunoprecipitation and massively parallel DNA sequencing of a bacteriophage library displaying proteome-wide peptides from all human viruses. We assayed over 10(8) antibody-peptide interactions in 569 humans across four continents, nearly doubling the number of previously established viral epitopes. We detected antibodies to an average of 10 viral species per person and 84 species in at least two individuals. Although rates of specific virus exposure were heterogeneous across populations, antibody responses targeted strongly conserved "public epitopes" for each virus, suggesting that they may elicit highly similar antibodies. VirScan is a powerful approach for studying interactions between the virome and the immune system.

Indexed as

Antibodies, ViralEpitopes, B-LymphocyteHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsHumansImmune SystemImmunoprecipitationPeptide LibrarySerologic TestsVirus DiseasesVirusesAntibodies, ViralEpitopes, B-LymphocytePeptide Library

Identifiers

PMID26045439
PMCPMC4844011
OpenAlexW1900892538

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.