Evidence map›Paper›PMID 26044654›Full record

ArticleBMC genomics2015

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication.

Yang Dong, Xiaolei Zhang, Min Xie, Babak Arefnezhad, Zongji Wang, Wenliang Wang, Shaohong Feng, Guodong Huang, Rui Guan, Wenjing Shen and 10 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 120 citations in OpenAlex.

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  20. Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus).Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 4 countries.

Yang DongKunming University of Science and Technology, Kunming, 650093, China. loyalyang@gmail.com.
Xiaolei ZhangCAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China. xlviolet@gmail.com.
Min XieBGI-Shenzhen, Shenzhen, 518083, China. feixue1039@gmail.com.
Babak ArefnezhadAgricultural Biotechnology Research Institute of Iran, Karaj, Iran. babaref@yahoo.com.
Zongji WangBGI-Shenzhen, Shenzhen, 518083, China. wangzongji@genomics.cn.
Wenliang WangBGI-Shenzhen, Shenzhen, 518083, China. wangwenliang@genomics.cn.
Shaohong FengBGI-Shenzhen, Shenzhen, 518083, China. fengshaohong@genomics.cn.
Guodong HuangBGI-Shenzhen, Shenzhen, 518083, China. huangguodong@genomics.cn.
Rui GuanBGI-Shenzhen, Shenzhen, 518083, China. guanrui@genomics.cn.
Wenjing ShenCAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China. changchangfandiao@126.com.
Rowan BunchCSIRO, Agriculture Flagship, Brisbane, 4065, QLD, Australia. Rowan.Bunch@csiro.au.
Russell McCullochCSIRO, Agriculture Flagship, Brisbane, 4065, QLD, Australia. Russell.Mcculloch@csiro.au.
Qiye LiBGI-Shenzhen, Shenzhen, 518083, China. liqiye@genomics.cn.
Bo LiBGI-Shenzhen, Shenzhen, 518083, China. liqiye@genomics.cn.
Guojie ZhangBGI-Shenzhen, Shenzhen, 518083, China. zhanggjconi@gmail.com.
Xun XuBGI-Shenzhen, Shenzhen, 518083, China. xuxun@genomics.cn.
James W KijasCSIRO, Agriculture Flagship, Brisbane, 4065, QLD, Australia. James.Kijas@csiro.au.
Ghasem Hosseini SalekdehAgricultural Biotechnology Research Institute of Iran, Karaj, Iran. hsalekdeh@yahoo.com.
Wen WangCAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China. wwang@mail.kiz.ac.cn.
Yu JiangCAS-Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming, Yunnan, 650223, China. jiangyu96@163.com.
BGI Group (China) · CNCommonwealth Scientific and Industrial Research Organisation · AUKunming Institute of Zoology · CNAgricultural Biotechnology Research Institute of Iran · IRKunming University of Science and Technology · CNRoyan Institute · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDomestic goats (Capra hircus) have been selected to play an essential role in agricultural production systems, since being domesticated from their wild progenitor, bezoar (Capra aegagrus). A detailed understanding of the genetic consequences imparted by the domestication process remains a key goal of evolutionary genomics.

resultsWe constructed the reference genome of bezoar and sequenced representative breeds of domestic goats to search for genomic changes that likely have accompanied goat domestication and breed formation. Thirteen copy number variation genes associated with coat color were identified in domestic goats, among which ASIP gene duplication contributes to the generation of light coat-color phenotype in domestic goats. Analysis of rapidly evolving genes identified genic changes underlying behavior-related traits, immune response and production-related traits.

conclusionBased on the comparison studies of copy number variation genes and rapidly evolving genes between wild and domestic goat, our findings and methodology shed light on the genetic mechanism of animal domestication and will facilitate future goat breeding.

Indexed as

GenomeAmino Acid SequenceAnimalsAnimals, DomesticAnimals, WildBiological EvolutionBreedingDNADNA Copy Number VariationsGenetic VariationGoatsImmune SystemMaleMolecular Sequence DataMyelin and Lymphocyte-Associated Proteolipid ProteinsNervous SystemDNAMyelin and Lymphocyte-Associated Proteolipid ProteinsReceptor, Cholecystokinin A

Identifiers

PMID26044654
PMCPMC4455334
OpenAlexW1561398821

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.