Evidence map›Paper›PMID 26044091›Full record

ArticleJournal of experimental botany2015

Functional analysis of the three HMA4 copies of the metal hyperaccumulator Arabidopsis halleri.

Cécile Nouet, Jean-Benoit Charlier, Monique Carnol, Bernard Bosman, Frédéric Farnir, Patrick Motte, Marc Hanikenne

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 70 citations in OpenAlex.

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  10. Zinc allocation to and withinPlant-environment interactions (Hoboken, N.J.) · 2020
    Article
  11. di-Cysteine Residues of theFrontiers in plant science · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Cécile NouetFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium.
Jean-Benoit CharlierFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium.
Monique CarnolLaboratory of Plant and Microbial Ecology, Department of Biology, Ecology, Evolution, University of Liège, B-4000 Liège, Belgium.
Bernard BosmanLaboratory of Plant and Microbial Ecology, Department of Biology, Ecology, Evolution, University of Liège, B-4000 Liège, Belgium.
Frédéric FarnirBiostatistics and Bioinformatics, FARAH, Faculty of Veterinary Medicine, University of Liège, B-4000 Liège, Belgium.
Patrick MotteFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium PhytoSYSTEMS, University of Liège, B-4000 Liège, Belgium.
Marc HanikenneFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium PhytoSYSTEMS, University of Liège, B-4000 Liège, Belgium marc.hanikenne@ulg.ac.be.
University of Liège · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Arabidopsis halleri, the HMA4 gene has an essential function in Zn/Cd hypertolerance and hyperaccumulation by mediating root-to-shoot translocation of metals. Constitutive high expression of AhHMA4 results from a tandem triplication and cis-activation of the promoter of all three copies. The three AhHMA4 copies possess divergent promoter sequences, but highly conserved coding sequences, and display identical expression profiles in the root and shoot vascular system. Here, an AhHMA4::GFP fusion was expressed under the control of each of the three A. halleri HMA4 promoters in a hma2hma4 double mutant of A. thaliana to individually examine the function of each AhHMA4 copy. The protein showed non-polar localization at the plasma membrane of the root pericycle cells of both A. thaliana and A. halleri. The expression of each AhHMA4::GFP copy complemented the severe Zn-deficiency phenotype of the hma2hma4 mutant by restoring root-to-shoot translocation of Zn. However, each copy had a different impact on metal homeostasis in the A. thaliana genetic background: AhHMA4 copies 2 and 3 were more highly expressed and provided higher Zn tolerance in roots and accumulation in shoots than copy 1, and AhHMA4 copy 3 also increased Cd tolerance in roots. These data suggest a certain extent of functional differentiation among the three A. halleri HMA4 copies, stemming from differences in expression levels rather than in expression profile. HMA4 is a key node of the Zn homeostasis network and small changes in expression level can have a major impact on Zn allocation to root or shoot tissues.

Indexed as

Gene Expression Regulation, PlantAdenosine TriphosphatasesArabidopsisArabidopsis ProteinsDNA, ComplementaryGreen Fluorescent ProteinsHomeostasisMetalsMutationPromoter Regions, GeneticSequence Analysis, DNAAdenosine TriphosphatasesArabidopsis ProteinsDNA, ComplementaryGreen Fluorescent ProteinsHMA4 protein, ArabidopsisMetalsArabidopsis relativecadmiummetal homeostasismetal hyperaccumulationmetal hypertoleranceP-type ATPasezinc.

Identifiers

PMID26044091
PMCPMC4566976
OpenAlexW2122049810

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.