Evidence map›Paper›PMID 26043688›Full record

ArticleBiochemical and biophysical research communications2015

Identification and characterization of the linear region of ATG3 that interacts with ATG7 in higher eukaryotes.

Kazuto Ohashi, Takanori Otomo

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Binding Features and Functions of ATG3.Frontiers in cell and developmental biology · 2021
    Review
  6. Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kazuto OhashiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Rd, La Jolla, CA 92037, USA.
Takanori OtomoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Rd, La Jolla, CA 92037, USA. Electronic address: totomo@scripps.edu.
Scripps Research Institute · US

Funding

Structural Studies of the Autophagic Ubiquitin-Like ProteinsR01GM092740 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI OTOMO, TAKANORI · 2011 to 2023
$5.9M
NIGMS NIH HHS GM092740NIGMS NIH HHS R01 GM092740
6 · The paper itself

Abstract

Transfer of GABARAP thioester from the E1 ATG7 to the E2 ATG3 requires the interaction between the N-terminal domain of ATG7 and the flexible region (FR) of ATG3. This interaction has been visualized in the yeast Atg7-Atg3 complex crystal structure, but remains to be defined in higher eukaryotes. Here, our NMR data precisely define the region of the FR of human ATG3 that interacts with ATG7 (RIA7) and demonstrate RIA7 partially overlaps with the E3-interacting region, explaining how the E1-E2 and E2-E3 interactions are mutually exclusive. Mutational analyses identify critical residues of the RIA7 for the E1 interaction and GABARAP transfer, advancing our understanding of a molecular mechanism of the autophagic conjugation cascade in higher eukaryotes.

Indexed as

Amino Acid SequenceAnimalsAutophagy-Related Protein 7Autophagy-Related ProteinsConserved SequenceHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein Interaction Domains and MotifsProtein Interaction MapsSequence AlignmentUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesATG3 protein, humanATG7 protein, humanAutophagy-Related Protein 7Autophagy-Related ProteinsUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesAutophagyE1-E2 interactionFlexible regionProtein-peptide interactionUbiquitin-like protein

Identifiers

PMID26043688
PMCPMC4507496
OpenAlexW657236717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.