Evidence map›Paper›PMID 26042553›Full record

ArticleNano letters2015

Self-Assembly into Nanoparticles Is Essential for Receptor Mediated Uptake of Therapeutic Antisense Oligonucleotides.

Kariem Ezzat, Yoshitsugu Aoki, Taeyoung Koo, Graham McClorey, Leif Benner, Anna Coenen-Stass, Liz O'Donovan, Taavi Lehto, Antonio Garcia-Guerra, Joel Nordin and 10 more

Abstract read
In one paragraph

Article in Nano letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
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  6. Synthesis of New Polyfluoro Oligonucleotides via Staudinger Reaction.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 7 countries.

Kariem Ezzat†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Yoshitsugu Aoki†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Taeyoung Koo†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Graham McClorey†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Leif Benner†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Anna Coenen-Stass†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Liz O'Donovan∥Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom.
Taavi Lehto⊥Department of Laboratory Medicine, Karolinska Institute, Stockholm SE-171 77, Sweden.
Antonio Garcia-Guerra#Clarendon Laboratory, Department of Physics, University of Oxford, OX13PU, Oxford, United Kingdom.
Joel Nordin⊥Department of Laboratory Medicine, Karolinska Institute, Stockholm SE-171 77, Sweden.
Amer F Saleh∥Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom.
Mark Behlke∇Integrated DNA Technologies (IDT), Coralville, Iowa 55241, United States.
John Morris†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Aurelie Goyenvalle○Université de Versailles Saint Quentin, Montigny le Bretonneux 78180, France.
Branislav Dugovic◆Department of Chemistry and Biochemistry, University of Bern, 3012 Bern, Switzerland.
Christian Leumann◆Department of Chemistry and Biochemistry, University of Bern, 3012 Bern, Switzerland.
Siamon Gordon¶Sir William Dunn School of Pathology, University of Oxford, OX1 3RE, Oxford, United Kingdom.
Michael J Gait∥Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom.
Samir El-Andaloussi†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
Matthew J A Wood†Department of Physiology, Anatomy, and Genetics, University of Oxford, OX13QX, Oxford, United Kingdom.
University of Oxford · GBKarolinska Institutet · SEMedical Research Council · GBUniversity of Bern · CHClarendon College · USInstitute for Basic Science · KRIntegrated DNA Technologies (United States) · USMRC Laboratory of Molecular Biology · GBNational Center of Neurology and Psychiatry · JPUniversité de Versailles Saint-Quentin-en-Yvelines · FR

Funding

Medical Research Council G0900887Medical Research Council MC_PC_12020Medical Research Council MC_U105178803Medical Research Council U105178803
6 · The paper itself

Abstract

Antisense oligonucleotides (ASOs) have the potential to revolutionize medicine due to their ability to manipulate gene function for therapeutic purposes. ASOs are chemically modified and/or incorporated within nanoparticles to enhance their stability and cellular uptake, however, a major challenge is the poor understanding of their uptake mechanisms, which would facilitate improved ASO designs with enhanced activity and reduced toxicity. Here, we study the uptake mechanism of three therapeutically relevant ASOs (peptide-conjugated phosphorodiamidate morpholino (PPMO), 2'Omethyl phosphorothioate (2'OMe), and phosphorothioated tricyclo DNA (tcDNA) that have been optimized to induce exon skipping in models of Duchenne muscular dystrophy (DMD). We show that PPMO and tcDNA have high propensity to spontaneously self-assemble into nanoparticles. PPMO forms micelles of defined size and their net charge (zeta potential) is dependent on the medium and concentration. In biomimetic conditions and at low concentrations, PPMO obtains net negative charge and its uptake is mediated by class A scavenger receptor subtypes (SCARAs) as shown by competitive inhibition and RNAi silencing experiments in vitro. In vivo, the activity of PPMO was significantly decreased in SCARA1 knockout mice compared to wild-type animals. Additionally, we show that SCARA1 is involved in the uptake of tcDNA and 2'OMe as shown by competitive inhibition and colocalization experiments. Surface plasmon resonance binding analysis to SCARA1 demonstrated that PPMO and tcDNA have higher binding profiles to the receptor compared to 2'OMe. These results demonstrate receptor-mediated uptake for a range of therapeutic ASO chemistries, a mechanism that is dependent on their self-assembly into nanoparticles.

Indexed as

AnimalsBase SequenceCell LineExonsGenetic TherapyMiceMice, Inbred C57BLMice, KnockoutMicellesMuscular Dystrophy, DuchenneNanoparticlesOligonucleotides, AntisenseScavenger Receptors, Class AMicellesOligonucleotides, AntisenseScavenger Receptors, Class AAntisense oligonucleotidesdeliverynanoparticlesscavenger receptorsself-assemblyuptake mechanism

Identifiers

PMID26042553
PMCPMC6415796
OpenAlexW2189208225

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.