Evidence map›Paper›PMID 26042471›Full record

ArticleACS chemical biology2015

Structural Basis for Enhancement of Carbapenemase Activity in the OXA-51 Family of Class D β-Lactamases.

Clyde A Smith, Nuno Tiago Antunes, Nichole K Stewart, Hilary Frase, Marta Toth, Katherine A Kantardjieff, Sergei Vakulenko

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.1field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. A conserved hub protein required for peptidoglycan remodeling and cell division inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Review
  5. Article
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  11. Article
  12. Antibiotics (Basel, Switzerland) · 2024
    Article
  13. Precision drug design againstFrontiers in cellular and infection microbiology · 2023
    Article
  14. Specific Amino Acid Substitutions in OXA-51-TypeInternational journal of molecular sciences · 2022
    Article
  15. Dynamic Gene Clusters Mediating Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2022
    Article
  16. Article
  17. Colistin and Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2021
    Article
  18. Article
  19. Article
  20. Carbapenemases: TransformingBiomolecules · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Clyde A Smith†Stanford Synchrotron Radiation Lightsource, Stanford University, Menlo Park, California 94025, United States.
Nuno Tiago Antunes‡Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Nichole K Stewart‡Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Hilary Frase‡Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Marta Toth‡Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Katherine A Kantardjieff§College of Science and Mathematics, California State University, San Marcos, California 92078, United States.
Sergei Vakulenko‡Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.
University of Notre Dame · USCalifornia State University, San Marcos · USStanford Synchrotron Radiation Lightsource · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Resistance to Carbapenem Antibiotics in Acinetobacter baumanniiR01AI114668 · NIAID · UNIVERSITY OF NOTRE DAME · PI BUYNAK, JOHN D, VAKULENKO, SERGEI · 2015 to 2020
$3.1M
Class A CarbapenemasesR01AI089726 · NIAID · UNIVERSITY OF NOTRE DAME · PI VAKULENKO, SERGEI · 2011 to 2015
$1.8M
NIAID NIH HHS R01 AI089726NIAID NIH HHS R01 AI114668NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393).
6 · The paper itself

Abstract

Class D β-lactamases of Acinetobacter baumannii are enzymes of the utmost clinical importance, producing resistance to last resort carbapenem antibiotics. Although the OXA-51-like enzymes constitute the largest family of class D β-lactamases, they are poorly studied and their importance in conferring carbapenem resistance is controversial. We present the detailed microbiological, kinetic, and structural characterization of the eponymous OXA-51 β-lactamase. Kinetic studies show that OXA-51 has low catalytic efficiency for carbapenems, primarily due to the low affinity of the enzyme for these substrates. Structural studies demonstrate that this low affinity results from the obstruction of the enzyme active site by the side chain of Trp222, which presents a transient steric barrier to an incoming carbapenem substrate. The Trp222Met substitution relieves this steric hindrance and elevates the affinity of the mutant enzyme for carbapenems by 10-fold, significantly increasing the levels of resistance to these antibiotics. The ability of OXA-51 to evolve into a robust carbapenemase as the result of a single amino acid substitution may, in the near future, elevate the ubiquitous enzymes of the OXA-51 family to the status of the most deleterious A. baumannii carbapenemases, with dire clinical consequences.

Indexed as

Acinetobacter baumanniiBacterial Proteinsbeta-LactamasesCatalytic DomainKineticsModels, MolecularProtein ConformationSubstrate SpecificityBacterial Proteinsbeta-lactamase OXA-51, Acinetobacter baumanniibeta-Lactamasescarbapenemase

Identifiers

PMID26042471
PMCPMC4546549
OpenAlexW648076425

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.