Evidence map›Paper›PMID 26041815›Full record

ArticleHuman molecular genetics2015

DICER/AGO-dependent epigenetic silencing of D4Z4 repeats enhanced by exogenous siRNA suggests mechanisms and therapies for FSHD.

Jong-Won Lim, Lauren Snider, Zizhen Yao, Rabi Tawil, Silvère M Van Der Maarel, Frank Rigo, C Frank Bennett, Galina N Filippova, Stephen J Tapscott

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 48 citations in OpenAlex.

  1. Local Non-Coding Regulatory Elements in Muscular Dystrophies.International journal of molecular sciences · 2025
    Review
  2. Article
  3. Deciphering Facioscapulohumeral Dystrophy in the clinical trials era: where are we now?Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology · 2025
    Review
  4. Muscular Dystrophies.Advances in experimental medicine and biology · 2025
    Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Current Therapeutic Approaches in FSHD.Journal of neuromuscular diseases · 2021
    Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Therapeutic Strategies Targeting DUX4 in FSHD.Journal of clinical medicine · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Jong-Won LimDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Lauren SniderDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Zizhen YaoAllen Brain Institute, Seattle, WA 98103, USA.
Rabi TawilDepartment of Neurology, University of Rochester, Rochester, NY 14642, USA.
Silvère M Van Der MaarelDepartment of Human Genetics, Leiden University Medical Center, Leiden 2333 ZA, The Netherlands and.
Frank RigoIsis Pharmaceuticals, Carlsbad, CA 92010, USA.
C Frank BennettIsis Pharmaceuticals, Carlsbad, CA 92010, USA.
Galina N FilippovaDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA, gfilippo@fhcrc.org stapscot@fhcrc.org.
Stephen J TapscottDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA, gfilippo@fhcrc.org stapscot@fhcrc.org.
Fred Hutch Cancer Center · USIonis Pharmaceuticals (United States) · USAllen Institute · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZALeiden University Medical Center · NLUniversity of Rochester · US

Funding

The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
NINDS NIH HHS NINDS P01NS069539NINDS NIH HHS P01 NS069539
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is caused by the aberrant expression of the DUX4 transcription factor in skeletal muscle. The DUX4 retrogene is encoded in the D4Z4 macrosatellite repeat array, and smaller array size or a mutation in the SMCHD1 gene results in inefficient epigenetic repression of DUX4 in skeletal muscle, causing FSHD1 and FSHD2, respectively. Previously we showed that the entire D4Z4 repeat is bi-directionally transcribed with the generation of small si- or miRNA-like fragments and suggested that these might suppress DUX4 expression through the endogenous RNAi pathway. Here we show that exogenous siRNA targeting the region upstream of the DUX4 transcription start site suppressed DUX4 mRNA expression and increased both H3K9 methylation and AGO2 recruitment. In contrast, similarly targeted MOE-gapmer antisense oligonucleotides that degrade RNA but do not engage the RNAi pathway did not repress DUX4 expression. In addition, knockdown of DICER or AGO2 using either siRNA or MOE-gapmer chemistries resulted in the induction of DUX4 expression in control muscle cells that normally do not express DUX4, indicating that the endogenous RNAi pathway is necessary to maintain repression of DUX4 in control muscle cells. Together these data demonstrate a role of the endogenous RNAi pathway in repeat-mediated epigenetic repression of the D4Z4 macrosatellite repeat, and show that enhancing the activity of this pathway by supplying exogenous siRNA oligonucleotides represents a potential therapeutic approach to silencing DUX4 in FSHD.

Indexed as

Epigenesis, GeneticGene SilencingMicrosatellite RepeatsArgonaute ProteinsCell LineChromatinGene Expression RegulationHistonesHomeodomain ProteinsHumansMuscular Dystrophy, FacioscapulohumeralRibonuclease IIIRNA InterferenceRNA, Small InterferingTranscription Initiation SiteArgonaute ProteinsChromatinDUX4L1 protein, humanHistonesHomeodomain ProteinsRibonuclease IIIRNA, Small Interfering

Identifiers

PMID26041815
PMCPMC4527486
OpenAlexW1839827908

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.