Evidence map›Paper›PMID 26041780›Full record

ArticleThe Journal of biological chemistry2015

1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium-regulating Components.

Seong Min Lee, Erin M Riley, Mark B Meyer, Nancy A Benkusky, Lori A Plum, Hector F DeLuca, J Wesley Pike

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 98 citations in OpenAlex.

  1. Article
  2. Review
  3. The Molecular Biology of Placental Transport of Calcium to the Human Foetus.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. Periparturient Mineral Metabolism: Implications to Health and Productivity.Animals : an open access journal from MDPI · 2024
    Review
  7. Article
  8. Article
  9. Cutting Edge: Aire Is a Coactivator of the Vitamin D Receptor.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  10. Article
  11. Genomic mechanisms controlling renal vitamin D metabolism.The Journal of steroid biochemistry and molecular biology · 2023
    Article
  12. Review
  13. Vitamin DAnimals : an open access journal from MDPI · 2022
    Article
  14. Review
  15. Article
  16. Review
  17. Vitamin D and Gut Health.Advances in experimental medicine and biology · 2022
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Seong Min LeeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Erin M RileyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Mark B MeyerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Nancy A BenkuskyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Lori A PlumDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Hector F DeLucaDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706.
J Wesley PikeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706. Electronic address: pike@biochem.wisc.edu.
University of Wisconsin–Madison · US

Funding

Dynamic Mechanisms of Vitamin D-Induced Gene ExpressionR01DK072281 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2005 to 2012
$2.6M
Vitamin D Ligands and Regulation of Calcium HomeostasisR01DK073995 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2008 to 2012
$1.5M
NIDDK NIH HHS DK-072281NIDDK NIH HHS DK-073995NIDDK NIH HHS R01 DK072281NIDDK NIH HHS R01 DK073995
6 · The paper itself

Abstract

1,25-Dihydroxyvitamin D3 (1,25(OH)2D3) plays an integral role in calcium homeostasis in higher organisms through its actions in the intestine, kidney, and skeleton. Interestingly, although several intestinal genes are known to play a contributory role in calcium homeostasis, the entire caste of key components remains to be identified. To examine this issue, Cyp27b1 null mice on either a normal or a high calcium/phosphate-containing rescue diet were treated with vehicle or 1,25(OH)2D3 and evaluated 6 h later. RNA samples from the duodena were then subjected to RNA sequence analysis, and the data were analyzed bioinformatically. 1,25(OH)2D3 altered expression of large collections of genes in animals under either dietary condition. 45 genes were found common to both 1,25(OH)2D3-treated groups and were composed of genes previously linked to intestinal calcium uptake, including S100g, Trpv6, Atp2b1, and Cldn2 as well as others. An additional distinct network of 56 genes was regulated exclusively by diet. We then conducted a ChIP sequence analysis of binding sites for the vitamin D receptor (VDR) across the proximal intestine in vitamin D-sufficient normal mice treated with vehicle or 1,25(OH)2D3. The residual VDR cistrome was composed of 4617 sites, which was increased almost 4-fold following hormone treatment. Interestingly, the majority of the genes regulated by 1,25(OH)2D3 in each diet group as well as those found in common in both groups contained frequent VDR sites that likely regulated their expression. This study revealed a global network of genes in the intestine that both represent direct targets of vitamin D action in mice and are involved in calcium absorption.

Indexed as

25-Hydroxyvitamin D3 1-alpha-HydroxylaseAnimalsCalciumFemaleGene DeletionGene Expression RegulationGene Regulatory NetworksIntestinal MucosaIntestinesMaleMiceMice, Inbred C57BLReceptors, CalcitriolVitamin DVitamins25-Hydroxyvitamin D3 1-alpha-HydroxylaseCalciumdihydroxy-vitamin D3Receptors, CalcitriolVitamin DVitamins1,25(OH)2D3 regulated target genescalcium regulating gene networkcalcium transportChIP-sequencing (ChIP-seq)gene transcriptionintestineRNA-sequencingVDR cistromevitamin D

Identifiers

PMID26041780
PMCPMC4505063
OpenAlexW1484617378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.