Evidence map›Paper›PMID 26040922›Full record

ArticleScientific reports2015

A RP-UFLC Assay for Protein Tyrosine Phosphatases: Focus on Protein Tyrosine Phosphatase Non-Receptor Type 2 (PTPN2).

Romain Duval, Linh-Chi Bui, Jérémy Berthelet, Julien Dairou, Cécile Mathieu, Fabien Guidez, Jean-Marie Dupret, Jan Cools, Christine Chomienne, Fernando Rodrigues-Lima

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Romain DuvalUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Linh-Chi BuiUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Jérémy BertheletUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Julien DairouUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Cécile MathieuUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Fabien GuidezUniversité Paris Diderot, Sorbonne Paris Cité, INSERM UMR_S1131, Institut Universitaire d'Hématologie, 75010 Paris, France.
Jean-Marie DupretUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Jan CoolsVIB Center for the Biology of Disease, Leuven, Belgium.
Christine Chomienne1] Université Paris Diderot, Sorbonne Paris Cité, INSERM UMR_S1131, Institut Universitaire d'Hématologie, 75010 Paris, France [2] Service de Biologie Cellulaire, Assistance Publique des Hôpitaux de Paris (AP-HP), Hôpital Saint Louis, 75010 Paris, France.
Fernando Rodrigues-LimaUniversité Paris Diderot, Sorbonne Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, CNRS UMR 8251, 75013, Paris, France.
Sorbonne Paris Cité · FRCentre National de la Recherche Scientifique · FRUniversité Paris Cité · FRDélégation Paris 7 · FRInserm · FRVIB-KU Leuven Center for Cancer Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein tyrosine phosphatases (PTPs) are involved in numerous signaling pathways and dysfunctions of certain of these enzymes have been linked to several human diseases including cancer and autoimmune diseases. PTPN2 is a PTP mainly expressed in hematopoietic cells and involved in growth factor and JAK/STAT signaling pathways. Loss of function analyses in patients with mutation/deletion of the PTPN2 gene and knock-out mouse models indicate that PTPN2 acts as a tumor suppressor in T-cell malignancies and as a regulator of inflammation and immunity. The use of sensitive and quantitative assays is of prime importance to better characterize the biochemical properties of PTPN2 and its biological roles. We report a highly sensitive non-radioactive assay that allows the measurement of the activity of purified PTPN2 and of endogenous PTPN2 immunoprecipitated on agarose beads. The assay relies on separation and quantitation by reverse-phase ultra fast liquid chromatography (RP-UFLC) of a fluorescein-labeled phosphotyrosine peptide substrate derived from the sequence of STAT1. The applicability and reliability of this approach is supported by kinetic and mechanistic studies using PTP inhibitors. More broadly, our PTPN2 assay provides the basis for the design of flexible methods for the measurement of other PTPs.

Indexed as

Cell Line, TumorChromatography, LiquidChromatography, Reverse-PhaseEnzyme ActivationEnzyme AssaysEnzyme InhibitorsHumansHydrogen PeroxideKineticsPeptidesPhosphorylationProtein Tyrosine Phosphatase, Non-Receptor Type 2Recombinant ProteinsSubstrate SpecificitySulfonesVanadatesEnzyme InhibitorsHydrogen PeroxidePeptidesphenyl vinyl sulfoneProtein Tyrosine Phosphatase, Non-Receptor Type 2Recombinant ProteinsSulfonesVanadates

Identifiers

PMID26040922
PMCPMC4455150
OpenAlexW2253766407

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.