Evidence map›Paper›PMID 26040272›Full record

ArticleNature communications2015

Evolutionary analysis of the female-specific avian W chromosome.

Linnéa Smeds, Vera Warmuth, Paulina Bolivar, Severin Uebbing, Reto Burri, Alexander Suh, Alexander Nater, Stanislav Bureš, Laszlo Z Garamszegi, Silje Hogner and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. SCiMS: Sex Calling in Metagenomic Sequences.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Linnéa SmedsDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Vera WarmuthDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Paulina BolivarDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Severin UebbingDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.ORCID 0000000324396946
Reto BurriDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Alexander SuhDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Alexander NaterDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.
Stanislav BurešLaboratory of Ornithology, Department of Zoology, Palacky University, 77146 Olomouc, Czech Republic.
Laszlo Z GaramszegiDepartment of Evolutionary Ecology, Estación Biológica de Doñana-CSIC, 41092 Seville, Spain.
Silje Hogner1] Department of Biosciences, Centre for Ecological and Evolutionary Synthesis, University of Oslo, 0316 Oslo, Norway [2] Natural History Museum, University of Oslo, 0318 Oslo, Norway.
Juan MorenoMuseo Nacional de Ciencias Naturales-CSIC, 28006 Madrid, Spain.
Anna QvarnströmDepartment of Animal Ecology, Evolutionary Biology Centre, Uppsala University, 75236 Uppsala, Sweden.
Milan RužićBird Protection and Study Society of Serbia, Radnička 20a, 21000 Novi Sad, Serbia.
Stein-Are Sæther1] Department of Biosciences, Centre for Ecological and Evolutionary Synthesis, University of Oslo, 0316 Oslo, Norway [2] Norwegian Institute for Nature Research (NINA), 7034 Trondheim, Norway.
Glenn-Peter SætreDepartment of Biosciences, Centre for Ecological and Evolutionary Synthesis, University of Oslo, 0316 Oslo, Norway.
Janos TörökBehavioural Ecology Group, Department of Systematic Zoology and Ecology, Eötvös Loránd University, 1117 Budapest, Hungary.
Hans EllegrenDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.

Funding

European Research Council 249976
6 · The paper itself

Abstract

The typically repetitive nature of the sex-limited chromosome means that it is often excluded from or poorly covered in genome assemblies, hindering studies of evolutionary and population genomic processes in non-recombining chromosomes. Here, we present a draft assembly of the non-recombining region of the collared flycatcher W chromosome, containing 46 genes without evidence of female-specific functional differentiation. Survival of genes during W chromosome degeneration has been highly non-random and expression data suggest that this can be attributed to selection for maintaining gene dose and ancestral expression levels of essential genes. Re-sequencing of large population samples revealed dramatically reduced levels of within-species diversity and elevated rates of between-species differentiation (lineage sorting), consistent with low effective population size. Concordance between W chromosome and mitochondrial DNA phylogenetic trees demonstrates evolutionary stable matrilineal inheritance of this nuclear-cytonuclear pair of chromosomes. Our results show both commonalities and differences between W chromosome and Y chromosome evolution.

Indexed as

Evolution, MolecularAnimalsBirdsChickensDNA, MitochondrialFemaleFinchesLizardsPhylogenyReptilesSex ChromosomesSongbirdsStruthioniformesTurtlesDNA, Mitochondrial

Identifiers

PMID26040272
PMCPMC4468903

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.