Evidence map›Paper›PMID 26039937›Full record

ArticleScientific reports2015

CRISPR/Cas9-mediated reporter knock-in in mouse haploid embryonic stem cells.

Yasuyoshi Kimura, Masaaki Oda, Tsunetoshi Nakatani, Yoichi Sekita, Asun Monfort, Anton Wutz, Hideki Mochizuki, Toru Nakano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. EditingInternational journal of molecular sciences · 2021
    Review
  3. Gene insertion in3 Biotech · 2021
    Article
  4. Efficient SNP editing in haploid human pluripotent stem cells.Journal of assisted reproduction and genetics · 2020
    Article
  5. Article
  6. Article
  7. A versatile genetic tool: haploid cells.Stem cell research & therapy · 2017
    Review
  8. Article
  9. CRISPR/Cas9: Transcending the Reality of Genome Editing.Molecular therapy. Nucleic acids · 2017
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Genome Editing Using Mammalian Haploid Cells.International journal of molecular sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Yasuyoshi KimuraDepartment of Pathology.
Masaaki OdaDepartment of Pathology.
Tsunetoshi NakataniDepartment of Pathology.
Yoichi SekitaDepartment of Pathology.
Asun MonfortInstitute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zürich, Hönggerberg, 8049 Zürich, Switzerland.
Anton WutzInstitute of Molecular Health Sciences, Swiss Federal Institute of Technology, ETH Zürich, Hönggerberg, 8049 Zürich, Switzerland.
Hideki MochizukiDepartment of Neurology, Graduate School of Medicine.
Toru NakanoDepartment of Pathology.
Graduate School USA · USOsaka University · JPÉcole Polytechnique Fédérale de Lausanne · CHETH Zurich · CHKitasato University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mouse parthenogenetic haploid embryonic stem cells (ESCs) are pluripotent cells generated from chemically activated oocytes. Haploid ESCs provide an opportunity to study the effect of genetic alterations because of their hemizygotic characteristics. However, their further application for the selection of unique phenotypes remains limited since ideal reporters to monitor biological processes such as cell differentiation are missing. Here, we report the application of CRISPR/Cas9-mediated knock-in of a reporter cassette, which does not disrupt endogenous target genes in mouse haploid ESCs. We first validated the system by inserting the P2A-Venus reporter cassette into the housekeeping gene locus. In addition to the conventional strategy using the Cas9 nuclease, we employed the Cas9 nickase and truncated sgRNAs to reduce off-target mutagenesis. These strategies induce targeted insertions with an efficiency that correlated with sgRNA guiding activity. We also engineered the neural marker gene Sox1 locus and verified the precise insertion of the P2A-Venus reporter cassette and its functionality by monitoring neural differentiation. Our data demonstrate the successful application of the CRISPR/Cas9-mediated knock-in system for establishing haploid knock-in ESC lines carrying gene specific reporters. Genetically modified haploid ESCs have potential for applications in forward genetic screening of developmental pathways.

Indexed as

CRISPR-Cas SystemsGene ExpressionGenes, ReporterHaploidyAnimalsCell DifferentiationEmbryonic Stem CellsFemaleGene Knock-In TechniquesGene OrderGene TargetingGenetic LociMaleMiceMice, TransgenicRNA, Guide, CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsSox1 protein, mouseSOXB1 Transcription Factors

Identifiers

PMID26039937
PMCPMC4454075
OpenAlexW644569968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.