Evidence map›Paper›PMID 26039110›Full record

ArticleScientific reports2015

Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion.

Takuya Kuroda, Tomoko Kubori, Xuan Thanh Bui, Akihiro Hyakutake, Yumiko Uchida, Katsumi Imada, Hiroki Nagai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. iScience · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Membrane association and polar localization of theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
  8. Blue Native PAGE Analysis of Bacterial Secretion Complexes.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  9. Comparative Analysis of T4SS Molecular Architectures.Journal of microbiology and biotechnology · 2023
    Review
  10. Structure and Function of the Dot/Icm T4SS.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Bacteria-Killing Type IV Secretion Systems.Frontiers in microbiology · 2019
    Review
  17. Article
  18. VirB8 homolog TraE from plasmid pKM101 forms a hexameric ring structure and interacts with the VirB6 homolog TraD.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Polar delivery ofProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Takuya KurodaGraduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan.
Tomoko KuboriResearch Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Xuan Thanh BuiResearch Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Akihiro HyakutakeResearch Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Yumiko UchidaGraduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan.
Katsumi ImadaGraduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan.
Hiroki NagaiResearch Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
Osaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human pathogen Legionella pneumophila delivers a large array of the effector proteins into host cells using the Dot/Icm type IVB secretion system. Among the proteins composing the Dot/Icm system, an inner membrane protein DotI is known to be crucial for the secretion function but its structure and role in type IV secretion had not been elucidated. We report here the crystal structures of the periplasmic domains of DotI and its ortholog in the conjugation system of plasmid R64, TraM. These structures reveal a striking similarity to VirB8, a component of type IVA secretion systems, suggesting that DotI/TraM is the type IVB counterpart of VirB8. We further show that DotI and its partial paralog DotJ form a stable heterocomplex. R64 TraM, encoded by the conjugative plasmid lacking DotJ ortholog, forms a homo-hexamer. The DotI-DotJ complex is distinct from the core complex, which spans both inner and outer membranes to form a substrate conduit, and seems not to stably associate with the core complex. These results give insight into VirB8-family inner membrane proteins essential for type IV secretion and aid towards understanding the molecular basis of secretion systems essential for bacterial pathogenesis.

Indexed as

Type IV Secretion SystemsAmino Acid SequenceBacterial ProteinsGene Expression Regulation, BacterialLegionellaMembrane ProteinsModels, MolecularMolecular Sequence DataMultiprotein ComplexesMutationProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtein MultimerizationProtein TransportStructure-Activity RelationshipBacterial ProteinsMembrane ProteinsMultiprotein ComplexesType IV Secretion Systems

Identifiers

PMID26039110
PMCPMC4454188
OpenAlexW1502019171

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.