Evidence map›Paper›PMID 26039089›Full record

ArticlePloS one2015

Transcriptional and Post-Transcriptional Modulation of SPI1 and SPI2 Expression by ppGpp, RpoS and DksA in Salmonella enterica sv Typhimurium.

Christopher J Rice, Vinoy K Ramachandran, Neil Shearer, Arthur Thompson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  6. Review
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  10. σFrontiers in microbiology · 2021
    Article
  11. Microorganisms · 2020
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Persistent Infections by Nontyphoidal Salmonella in Humans: Epidemiology and Genetics.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2016
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christopher J RiceInstitute of Food Research, Norwich, NR4 7UA, United Kingdom.
Vinoy K RamachandranDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, United Kingdom.
Neil ShearerInstitute of Food Research, Norwich, NR4 7UA, United Kingdom.
Arthur ThompsonInstitute of Food Research, Norwich, NR4 7UA, United Kingdom.
Norwich Research Park · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council 44404-000-A
6 · The paper itself

Abstract

The expression of genes within Salmonella Pathogenicity Islands 1 and 2 (SPI1, SPI2) is required to facilitate invasion and intracellular replication respectively of S. Typhimurium in host cell lines. Control of their expression is complex and occurs via a variety of factors operating at transcriptional and post-transcriptional levels in response to the environmental stimuli found within the host. Several of the factors that modulate SPI1 and SPI2 expression are involved in the redistribution or modification of RNA polymerase (RNAP) specificity. These factors include the bacterial alarmone, ppGpp, the alternative sigma factor, RpoS, and the RNAP accessory protein, DksA. In this report we show not only how these three factors modulate SPI1 and SPI2 expression but also how they contribute to the 'phased' expression of SPI1 and SPI2 during progress through late-log and stationary phase in aerobic rich broth culture conditions. In addition, we demonstrate that the expression of at least one SPI1-encoded protein, SipC is subject to DksA-dependent post-transcriptional control.

Indexed as

Bacterial ProteinsMembrane ProteinsSalmonella entericaSalmonella typhimuriumSigma FactorGene Expression Regulation, BacterialGuanine NucleotidesTranscription, GeneticBacterial ProteinsGuanine NucleotidesMembrane ProteinsSigma Factorsigma factor KatF protein, BacteriaSpi1 protein, SalmonellaSPI-2 protein, Salmonella

Identifiers

PMID26039089
PMCPMC4454661
OpenAlexW638171832

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.